PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001913t5 | ||||||||
Common Name | TCM_001913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 42755.7 Da PI: 8.8521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.5e-17 | 202 | 248 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Thecc1EG001913t5 202 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYMKSLQ 248 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-20 | 195 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-20 | 195 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.451 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.05E-18 | 201 | 252 | No hit | No description |
Pfam | PF00010 | 2.0E-14 | 202 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-18 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MTVNSQQLNV SSAVPEFRGN PMPPPKFQFD SAQLNKSSEG LSKVCNFSPG AEHTGVNSSG 60 GNLIQREVKE CSGMTVGSSY CGSNQVRNDI DFSRGSSNGF GTTTTGLSAG TSKDDAPKAI 120 VQNETGKTET IEPTVTSSSG GSGSSLDRTC KQSTGVISSH KRKRRDGEDY ECQSETAELQ 180 SAAGNKPTQR SGSSRRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK TDKASMLDEA 240 IEYMKSLQLQ LQVVMWMGSG MAPMMFPGIQ HYMSRMGIGM GPPPLPSIHN PLHLSRVPVV 300 DQSMSMAPSQ NQAATCQTQQ LNQVNYQHPM QNPTFSEQYA RFLGFHHMQT ASQPMNMFGY 360 GPQTTGQSPV VSAPSGSGPF TGGAATTNNT SPSGKMG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 211 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048909.1 | 0.0 | PREDICTED: transcription factor PIF4 isoform X3 | ||||
Refseq | XP_017971808.1 | 0.0 | PREDICTED: transcription factor PIF4 isoform X1 | ||||
Swissprot | Q10CH5 | 2e-55 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A061DK12 | 0.0 | A0A061DK12_THECC; Phytochrome interacting factor 3-like 6, putative isoform 5 | ||||
STRING | EOX93066 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 6e-45 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001913t5 |
Entrez Gene | 18612195 |