PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001913t2 | ||||||||
Common Name | TCM_001913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 528aa MW: 57729 Da PI: 6.943 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.6 | 8.1e-17 | 330 | 376 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Thecc1EG001913t2 330 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYMKSLQ 376 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-20 | 323 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-20 | 323 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.451 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-17 | 329 | 380 | No hit | No description |
Pfam | PF00010 | 2.9E-14 | 330 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-18 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MNHCIPDWNF DQDNELVELL WQNGQVVLHS QTQRKHVQGQ KREQPTLRGG ATCLTYGNSS 60 HLINDDETTS WIQYPLEDSF EKEFCSNFFS ELPSSDPLET DDSKPNRQLD QHQPQFVKSS 120 SASPALHNMT VNSQQLNVSS AVPEFRGNPM PPPKFQFDSA QLNKSSEGLS KVCNFSPGAE 180 HTGVNSSGGN LIQREVKECS GMTVGSSYCG SNQVRNDIDF SRGSSNGFGT TTTGLSAGTS 240 KDDAPKAIVQ NETGKTETIE PTVTSSSGGS GSSLDRTCKQ STGVISSHKR KRRDGEDYEC 300 QSETAELQSA AGNKPTQRSG SSRRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD 360 KASMLDEAIE YMKSLQLQLQ VFQVMWMGSG MAPMMFPGIQ HYMSRMGIGM GPPPLPSIHN 420 PLHLSRVPVV DQSMSMAPSQ NQAATCQTQQ LNQVNYQHPM QNPTFSEQYA RFLGFHHMQT 480 ASQPMNMFGY GPQTTGQSPV VSAPSGSGPF TGGAATTNNT SPSGKMG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 334 | 339 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048909.1 | 0.0 | PREDICTED: transcription factor PIF4 isoform X3 | ||||
TrEMBL | A0A061DLW4 | 0.0 | A0A061DLW4_THECC; Phytochrome interacting factor 3-like 6, putative isoform 2 | ||||
STRING | EOX93066 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3468 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 2e-55 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001913t2 |
Entrez Gene | 18612195 |
Publications ? help Back to Top | |||
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