PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001913t1
Common NameTCM_001913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 525aa    MW: 57354.5 Da    PI: 6.943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001913t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68e-17330376455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Thecc1EG001913t1 330 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYMKSLQ 376
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-21323390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.451326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-17329380No hitNo description
Gene3DG3DSA:4.10.280.106.1E-21330384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-14330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-18332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNHCIPDWNF DQDNELVELL WQNGQVVLHS QTQRKHVQGQ KREQPTLRGG ATCLTYGNSS  60
HLINDDETTS WIQYPLEDSF EKEFCSNFFS ELPSSDPLET DDSKPNRQLD QHQPQFVKSS  120
SASPALHNMT VNSQQLNVSS AVPEFRGNPM PPPKFQFDSA QLNKSSEGLS KVCNFSPGAE  180
HTGVNSSGGN LIQREVKECS GMTVGSSYCG SNQVRNDIDF SRGSSNGFGT TTTGLSAGTS  240
KDDAPKAIVQ NETGKTETIE PTVTSSSGGS GSSLDRTCKQ STGVISSHKR KRRDGEDYEC  300
QSETAELQSA AGNKPTQRSG SSRRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD  360
KASMLDEAIE YMKSLQLQLQ VMWMGSGMAP MMFPGIQHYM SRMGIGMGPP PLPSIHNPLH  420
LSRVPVVDQS MSMAPSQNQA ATCQTQQLNQ VNYQHPMQNP TFSEQYARFL GFHHMQTASQ  480
PMNMFGYGPQ TTGQSPVVSA PSGSGPFTGG AATTNNTSPS GKMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048909.10.0PREDICTED: transcription factor PIF4 isoform X3
TrEMBLA0A061DK880.0A0A061DK88_THECC; Phytochrome interacting factor 3-like 6, putative isoform 1
STRINGEOX930660.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-57phytochrome interacting factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]