PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001889t2

Common Name

TCM_001889

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 271aa MW: 29530 Da PI: 8.2379

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001889t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.7	4.1e-22	14	60	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++s++d++ +Fslp+ dAA++Lgvc+++LK+iCR++G++RWPhRk Thecc1EG001889t2 14 TQSLSFDDIADFFSLPLYDAASTLGVCASALKKICRENGLDRWPHRK 60 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.733	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-19	17	61	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MMSLQQQNSS SAATQSLSFD DIADFFSLPL YDAASTLGVC ASALKKICRE NGLDRWPHRK 60 FLAGKSIEEI KRHAARERRK ELTELSKVHR QGSSQPQNNE LSKLQGAAAL PNLQQQGTKN 120 IQTGQALNFG HRSLMTGMTT SDEFKYGFPS DGLSIATNKW WGSSKSDGHE DVQVDGAETE 180 GEDKHQSVEK PGDMANEKPE ENGKLDDGIG PQGSGLLTAV RKRAVEEGGE ALKLGVYKGY 240 GIKKLGTREA SLLLRIFKSS LQKDWIHGPS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973178.1	0.0	PREDICTED: protein RKD5 isoform X1
TrEMBL	A0A061DLT2	0.0	A0A061DLT2_THECC; Uncharacterized protein isoform 2
STRING	EOX93036	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-10	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Thecc1EG001889t2
Entrez Gene	18612177

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]