PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001889t1

Common Name

TCM_001889

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 270aa MW: 29443 Da PI: 8.2379

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001889t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.7	4.1e-22	14	60	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++s++d++ +Fslp+ dAA++Lgvc+++LK+iCR++G++RWPhRk Thecc1EG001889t1 14 TQSLSFDDIADFFSLPLYDAASTLGVCASALKKICRENGLDRWPHRK 60 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.733	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-19	17	61	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MMSLQQQNSS SAATQSLSFD DIADFFSLPL YDAASTLGVC ASALKKICRE NGLDRWPHRK 60 FLAGKSIEEI KRHAARERRK ELTELSKVHR QGSQPQNNEL SKLQGAAALP NLQQQGTKNI 120 QTGQALNFGH RSLMTGMTTS DEFKYGFPSD GLSIATNKWW GSSKSDGHED VQVDGAETEG 180 EDKHQSVEKP GDMANEKPEE NGKLDDGIGP QGSGLLTAVR KRAVEEGGEA LKLGVYKGYG 240 IKKLGTREAS LLLRIFKSSL QKDWIHGPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973224.1	0.0	PREDICTED: uncharacterized protein LOC18612177 isoform X2
TrEMBL	A0A061DK62	0.0	A0A061DK62_THECC; Uncharacterized protein isoform 1
STRING	EOX93036	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	6e-10	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001889t1
Entrez Gene	18612177

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]