PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001841t2
Common NameTCM_001841
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26284.8 Da    PI: 9.9404
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001841t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-31958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Thecc1EG001841t2  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                      79***********************************************8 PP
2K-box110.91.4e-36791736100
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         s++ea+++ +qqe++kL+++i+  q+ +Rh+lGe L++L++keL++Le +Lek++++iRskKnell+++ie +qk+e elq++n++Lr+k+
  Thecc1EG001841t2  79 PGSVAEANTQFYQQEASKLRRQIRDVQNMNRHILGEALSTLTFKELKNLEGRLEKGISRIRSKKNELLFAEIEFMQKREVELQNDNMYLRAKI 171
                       44599***************************************************************************************9 PP

             K-box  99 ee 100
                       +e
  Thecc1EG001841t2 172 AE 173
                       86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.132161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-33273IPR002100Transcription factor, MADS-box
CDDcd002651.04E-44275No hitNo description
PRINTSPR004043.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.10687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SVRTTIDRYK KACADASNPG SVAEANTQFY QQEASKLRRQ IRDVQNMNRH ILGEALSTLT  120
FKELKNLEGR LEKGISRIRS KKNELLFAEI EFMQKREVEL QNDNMYLRAK IAENERAQQQ  180
QQQQANLIQG SVFQAVTSQP YNRNFLPVNL LEPSNDYSSQ DQTALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-21179175Myocyte-specific enhancer factor 2B
1tqe_Q7e-21179175Myocyte-specific enhancer factor 2B
1tqe_R7e-21179175Myocyte-specific enhancer factor 2B
1tqe_S7e-21179175Myocyte-specific enhancer factor 2B
5f28_A9e-21169169MEF2C
5f28_B9e-21169169MEF2C
5f28_C9e-21169169MEF2C
5f28_D9e-21169169MEF2C
6byy_A1e-20169169MEF2 CHIMERA
6byy_B1e-20169169MEF2 CHIMERA
6byy_C1e-20169169MEF2 CHIMERA
6byy_D1e-20169169MEF2 CHIMERA
6c9l_A7e-21179175Myocyte-specific enhancer factor 2B
6c9l_B7e-21179175Myocyte-specific enhancer factor 2B
6c9l_C7e-21179175Myocyte-specific enhancer factor 2B
6c9l_D7e-21179175Myocyte-specific enhancer factor 2B
6c9l_E7e-21179175Myocyte-specific enhancer factor 2B
6c9l_F7e-21179175Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2020910.0EF202091.1 Gossypium hirsutum MADS-box protein MADS7 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048826.11e-167PREDICTED: agamous-like MADS-box protein AGL1
RefseqXP_017969510.11e-167PREDICTED: agamous-like MADS-box protein AGL1
SwissprotQ93XH41e-136MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A061DSL71e-166A0A061DSL7_THECC; K-box region and MADS-box transcription factor family protein isoform 2
STRINGEOX929821e-153(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-127MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]