PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001827t1
Common NameTCM_001827
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 404aa    MW: 45485.6 Da    PI: 7.5983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001827t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-066990223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +Cp+Cgk Fs+   L  Hir+H
  Thecc1EG001827t1 69 SCPYCGKKFSSGQALGGHIRMH 90
                      6*******************99 PP

2zf-C2H211.80.00076116137223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C +C+++F++ ++L  H+r+H
  Thecc1EG001827t1 116 TCFICKERFPSIMSLCGHMRNH 137
                       6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.2616895IPR007087Zinc finger, C2H2
SMARTSM003550.0456890IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-86892IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-56997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.42E-66997No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM003550.28115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PfamPF139121.2E-4117139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEINRVEDEF SDKKSSENEN ERQRTVRDDD NDHGASSSDS LMERQRPNRR KFRWREKNVS  60
NGAEGQVRSC PYCGKKFSSG QALGGHIRMH EKPKAYKSVP KVLSTVTDKK EKGDNTCFIC  120
KERFPSIMSL CGHMRNHPER DWKGIRPPNS DETTPEPDTR LQQQEPAKNL PNCISNWSVT  180
GKRGRKASIK DKLAINRVPE KKRKLRNSED GNQSKFPRQE LKTEKAASIL EEEDILEKDL  240
PEEGEIIEEE LNIRKVDDGS SISEDVLTNS FSTFQALGIQ RVSHGKINDF DHLGELAFSD  300
ATIVDKKHRE ASSSGSNVGK SKKIARHGKT YQARSNHKIC LQMETADNPL SRITSQEEAK  360
EVGFRGEPAG ESGFDHKASL SPEAIQAGTA KMLDFDLNLP HEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048813.20.0PREDICTED: uncharacterized protein LOC18612131
TrEMBLA0A061DK000.0A0A061DK00_THECC; Uncharacterized protein
STRINGEOX929700.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-17C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]