PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001784t1

Common Name

TCM_001784

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HSF

Protein Properties

Length: 448aa MW: 51145.1 Da PI: 6.3943

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001784t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.4	3e-35	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+ +++l+ ws++g sf+v+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+k+ll Thecc1EG001784t1 14 FLTKTYEMVDDPMTNSLVGWSATGYSFIVWNPPDFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGEKHLL 97 9**************************************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Thecc1EG001784t1 98 KNIHRRK 104 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.5E-60	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.8E-38	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-34	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.5E-30	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-20	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-20	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDGSQGSSNA PPPFLTKTYE MVDDPMTNSL VGWSATGYSF IVWNPPDFSR DLLPRYFKHN 60 NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLKNI HRRKPIHSHS LVQQGNSGLP 120 LTEIEKKEFE GEIKRLSQDK SRLQLQLQRH QKENQEFQFQ IRLLSERFKN MEDRQRQVMV 180 FVAQLIHKPH FVSMFNQKSE FHNKKRKLLN FNHFIDGYNT VEHHSLTSQD ANLGAPSAPV 240 LNLEQIEKLD SSIKRWETLF HGIGETMDEK VYDFGISSRP SPIDVTELQT SSGDYDIDGE 300 LCSPSSHPCS PHSTDINSSP ELAVSVYKAD SPPIPSFDHI ANLNPKSFGI GVTSKHATPP 360 ETEALKEQVK ATADHSVPGK VNDVFWEQFL TEAPNSLDAQ EIQSDPGTTS GRISGSKPLD 420 DQNYWWKTNR VHYLAEHMEH LSPAERM*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDGSQGSSNA PPPFLTKTYE MVDDPMTNSL VGWSATGYSF IVWNPPDFSR DLLPRYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLKNI HRRKPIHSHS LVQQGNSGLP  120
LTEIEKKEFE GEIKRLSQDK SRLQLQLQRH QKENQEFQFQ IRLLSERFKN MEDRQRQVMV  180
FVAQLIHKPH FVSMFNQKSE FHNKKRKLLN FNHFIDGYNT VEHHSLTSQD ANLGAPSAPV  240
LNLEQIEKLD SSIKRWETLF HGIGETMDEK VYDFGISSRP SPIDVTELQT SSGDYDIDGE  300
LCSPSSHPCS PHSTDINSSP ELAVSVYKAD SPPIPSFDHI ANLNPKSFGI GVTSKHATPP  360
ETEALKEQVK ATADHSVPGK VNDVFWEQFL TEAPNSLDAQ EIQSDPGTTS GRISGSKPLD  420
DQNYWWKTNR VHYLAEHMEH LSPAERM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	3	103	19	129	Heat shock factor protein 1
5d5v_B	2e-25	3	103	19	129	Heat shock factor protein 1
5d5v_D	2e-25	3	103	19	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048764.2	0.0	PREDICTED: heat stress transcription factor A-4b isoform X1
TrEMBL	A0A061DLG0	0.0	A0A061DLG0_THECC; Winged-helix DNA-binding transcription factor family protein, putative
STRING	EOX92921	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16734	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	4e-75	HSF family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001784t1
Entrez Gene	18612100

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]