PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001726t1
Common NameTCM_001726
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 382aa    MW: 42205.1 Da    PI: 8.5667
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001726t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-3169122255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Thecc1EG001726t1  69 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 122
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.40965125IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2965123IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1467123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2269124IPR006447Myb domain, plants
PfamPF002494.0E-970121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MANTVKNGSD IQAETSSLAG FQKLSSFDLN EEVIDCENDS DEINADNQTT SKGKERTCRV  60
RQYVRSKMPR LRWTPDLHLS FVHAVERLGG QERATPKLVL QMMNVRGLSI AHVKSHLQMY  120
RSKKLNESGQ VISQTSRFLG TYKRFSPGGH FRIDNASPLP SSPVLLKQLY RPWESAAPCN  180
NTLGIENEPT VVFFQSGNNE LTSSHIFDLR KAIARSSRFL EDKRRPPGKM LANQGKLSRS  240
CSDISCRWNW NGKANNSSNG EFQICSSPSF FNCSQQPLSH PVAGAKGAGG LPYDHINEET  300
VKVEESSTGN GGRLSKEKYW SPKLDLSLHN SLDNGCGGLK DNDGRIQEID TVLALSLSSS  360
ASTQQALSSS EQHKEMDHLN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1870124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1870124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1870124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1870124357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021300714.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A061DJK00.0A0A061DJK0_THECC; Myb-like HTH transcriptional regulator family protein
STRINGEOX928640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-38G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]