PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001690t1

Common Name

TCM_001690

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 291aa MW: 32598 Da PI: 8.8919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001690t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46	9.8e-15	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN f++Lr++lP a kK++Ka+ L+++++++++L Thecc1EG001690t1 70 KNHSEAERRRRARINAHFDTLRDILPDA-----KKMDKASLLTEVIRHMREL 116 58************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.622	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-12	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-14	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	71	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-14	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-5	80	121	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-5	153	205	No hit	No description
CDD	cd04873	1.43E-6	154	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDQFSWSSNT HSSGFIVNSG CRGKTRNVSF SSSSSSSSLV LDSERGELVE ATMNLPRKGV 60 AAERNMAALK NHSEAERRRR ARINAHFDTL RDILPDAKKM DKASLLTEVI RHMRELKKNA 120 EEACKGILIP TDTDEVIVEK QEDELDGKPC LIRVSLCCDY KPGLLSDLRQ ALDALHLIIV 180 KAEMATWEGR MKNVFLVASC KERDSKDPAV RISTSTLDQT LRSVLDKFSA SEEFSFKATL 240 SNKRQRISLF NSSLSSSSKD LWFNTSTSWY HNHHSCFTLP LTSISISKKF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970705.1	0.0	PREDICTED: transcription factor bHLH30
TrEMBL	A0A061DK97	0.0	A0A061DK97_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX92827	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18594	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001690t1
Entrez Gene	18612033

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]