PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001660t1 | ||||||||
Common Name | TCM_001660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 254aa MW: 27800.5 Da PI: 9.1808 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94.6 | 8.4e-30 | 48 | 103 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + vrY+eClkNhAa++Gg+a+DGCgEf+ps geeg+ +a+kC+AC+CHRnFHR+e e Thecc1EG001660t1 48 KVVRYRECLKNHAAAMGGNATDGCGEFLPS-GEEGSLEAFKCSACNCHRNFHRKEIE 103 679**************************9.999********************986 PP | |||||||
2 | Homeobox | 16 | 2e-05 | 187 | 243 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+ft+eq e + ++ e + ++++++ ++ +++g++ r+ kvW +N ++ Thecc1EG001660t1 187 KRFRTKFTQEQKEKMLNFAEkagwRIQKLDESVVQQFCQEIGIKRRVLKVWMHNNKQ 243 789************88666666679****************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.5E-28 | 50 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 50 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-29 | 51 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.19 | 52 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-31 | 173 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-21 | 174 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-28 | 186 | 243 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00195 | 187 | 248 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MNSASPRKEK DMPISRNCGG NGHIIFSSGV GTGPPSPSME ENLRAHKKVV RYRECLKNHA 60 AAMGGNATDG CGEFLPSGEE GSLEAFKCSA CNCHRNFHRK EIECDCPFDC YHSALLNNAT 120 GRKLILGTPH HNYILGASAA AGTLISSRAE PPHQMIMSYK GGSVPSETDE KDDGGGGAAR 180 VSGKMRKRFR TKFTQEQKEK MLNFAEKAGW RIQKLDESVV QQFCQEIGIK RRVLKVWMHN 240 NKQSLAKKDS SEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 187 | 244 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048627.2 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 1e-67 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A061DJE2 | 0.0 | A0A061DJE2_THECC; Homeobox protein 21, putative | ||||
STRING | EOX92784 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 8e-70 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001660t1 |
Entrez Gene | 18612008 |
Publications ? help Back to Top | |||
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