PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001541t1 | ||||||||
Common Name | TCM_001541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GATA | ||||||||
Protein Properties | Length: 249aa MW: 28431.1 Da PI: 5.4526 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6e-18 | 183 | 218 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 Cs+C + +Tp+WR gp+g+ktLCnaCG++y++ +l+ Thecc1EG001541t1 183 CSHCLSENTPQWRMGPSGPKTLCNACGVRYKSGRLM 218 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.991 | 177 | 213 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.4E-17 | 177 | 227 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-13 | 179 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.5E-14 | 181 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.51E-14 | 182 | 233 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 208 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-15 | 183 | 218 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVCFRTLSQC FVICFCFAFC FVSCSSMAVE NINCSDSNNN NTVLSLSADE IEEFSSLEST 60 KLCVPQDPLE DLDWLPDFTD EIISLDGFCL TPEHEINFSY VSPNSYEGPE QKTTEDIDDD 120 YSAWESKRPR SVFEQSITFT KKKRRKRGGK RVWETRDFAL VADDKEAIVV GEEWNCRNVR 180 RTCSHCLSEN TPQWRMGPSG PKTLCNACGV RYKSGRLMPE YRPAASPTFD ITKHSNFHKK 240 ILKRKGFE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 144 | KKKRR |
2 | 140 | 145 | KKKRRK |
3 | 140 | 146 | KKKRRKR |
4 | 141 | 145 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048465.2 | 1e-164 | PREDICTED: GATA transcription factor 7 | ||||
TrEMBL | A0A061DJT1 | 0.0 | A0A061DJT1_THECC; GATA transcription factor 9-like protein | ||||
STRING | EOX92622 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4975 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-33 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001541t1 |
Entrez Gene | 18611910 |
Publications ? help Back to Top | |||
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