PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001516t1 | ||||||||
Common Name | TCM_001516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 510aa MW: 55264.9 Da PI: 6.8607 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.9 | 2.8e-08 | 181 | 263 | 22 | 97 |
NAM 22 kvegkk.leleev.ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 kv+gk+ l+l++ ik++d+y ePw++ + ++ + ++++yfF+k +kk+++++r n +++ g+W g+ k+++ ++ Thecc1EG001516t1 181 KVTGKSmLHLDQNlIKDFDLYGEkEPWEIWNlfggcNL-QYSDDLYFFTKLKKKSQNSSRMNGSVSIGMWMGEGSGKPITYSGL 263 66777754444445*****996449****754565322.234589**********************************98644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52768 | 5.4E-85 | 64 | 175 | No hit | No description |
Gene3D | G3DSA:3.40.800.20 | 4.1E-94 | 70 | 173 | IPR023801 | Histone deacetylase domain |
Pfam | PF00850 | 8.0E-76 | 74 | 467 | IPR023801 | Histone deacetylase domain |
CDD | cd09992 | 2.98E-126 | 74 | 473 | No hit | No description |
SuperFamily | SSF101941 | 5.1E-6 | 181 | 262 | IPR003441 | NAC domain |
Gene3D | G3DSA:3.40.800.20 | 4.1E-94 | 271 | 507 | IPR023801 | Histone deacetylase domain |
SuperFamily | SSF52768 | 5.4E-85 | 274 | 490 | No hit | No description |
PRINTS | PR01270 | 4.8E-14 | 284 | 307 | IPR000286 | Histone deacetylase superfamily |
PRINTS | PR01270 | 4.8E-14 | 318 | 333 | IPR000286 | Histone deacetylase superfamily |
PRINTS | PR01270 | 4.8E-14 | 402 | 412 | IPR000286 | Histone deacetylase superfamily |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090042 | Biological Process | tubulin deacetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042903 | Molecular Function | tubulin deacetylase activity | ||||
GO:0043014 | Molecular Function | alpha-tubulin binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0048487 | Molecular Function | beta-tubulin binding | ||||
GO:0051721 | Molecular Function | protein phosphatase 2A binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MELQTFRSIS FAGHGRFWKH SISGRKCFSK NIKTLVSCSY STEENDTLPS VKQLCNAKVI 60 YAVAPALGHN KESHPESNAR VPAIVTALAK MELTSKFRGS DILELQNFKL ASADDIASVH 120 AKAYVSGLEK AMDRASEQGL IVIDGSGPTY ATPTTFCESL VAAGAGLALV DSVVMPQPRT 180 KVTGKSMLHL DQNLIKDFDL YGEKEPWEIW NLFGGCNLQY SDDLYFFTKL KKKSQNSSRM 240 NGSVSIGMWM GEGSGKPITY SGLSAVAASK NQLDPPMGFA LIRPPGHHAI PNGPMGFCVF 300 GNVAIAARHA QRIHGLKRVF IIDFDVHHGN GTNDAFLDDP DIFFLSTHQD GSYPGTGRID 360 EIGHGAGEGA TLNLPLPGGS GDTAMRTVFD EVIVPCAQRF KPDIILVSAG YDGHVLDPLA 420 SLQFTTGTYY MLASNIKQLA KELCGGRCVF FLEGGYNLDS LSYSVADSFR AFLGEPSLAP 480 EFDNPAILYE EPSTRVKQAI QRVKHIHSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1zz0_A | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz0_B | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz0_C | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz0_D | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz1_A | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz1_B | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz1_C | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz1_D | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz3_A | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz3_B | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz3_C | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
1zz3_D | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
2gh6_A | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
2gh6_B | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
2gh6_C | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
2gh6_D | 4e-47 | 278 | 463 | 133 | 319 | Histone deacetylase-like amidohydrolase |
5g17_A | 4e-47 | 278 | 463 | 133 | 319 | HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE |
5g17_B | 4e-47 | 278 | 463 | 133 | 319 | HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE |
5g3w_C | 4e-47 | 278 | 463 | 138 | 324 | HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE |
5g3w_D | 4e-47 | 278 | 463 | 138 | 324 | HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048426.2 | 1e-180 | PREDICTED: histone deacetylase 14 | ||||
Swissprot | Q941D6 | 1e-150 | HDA14_ARATH; Histone deacetylase 14 | ||||
TrEMBL | A0A061DJP0 | 0.0 | A0A061DJP0_THECC; Histone deacetylase 14 isoform 1 | ||||
STRING | EOX92582 | 0.0 | (Theobroma cacao) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001516t1 |
Entrez Gene | 18611888 |