PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001496t1
Common NameTCM_001496
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 297aa    MW: 33437.3 Da    PI: 10.1908
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001496t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181762147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l ++v+q+G+++W+ Ia++++ gR++k+c++rw++ 
  Thecc1EG001496t1 17 RGHWRPAEDEKLERLVEQYGPKNWNFIAQHLQ-GRSGKSCRLRWYNQ 62
                      899*****************************.************96 PP
2Myb_DNA-binding49.21.2e-1569112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++T+eE+e+l+ a+   G++ W++Iar ++ gRt++ +k++++ 
  Thecc1EG001496t1  69 KKPFTEEEEEILLTAHGIQGNK-WASIARLFP-GRTDNAVKNHYHV 112
                       689*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5381267IPR017930Myb domain
SuperFamilySSF466891.83E-2915110IPR009057Homeodomain-like
SMARTSM007177.6E-171665IPR001005SANT/Myb domain
PfamPF002499.4E-181763IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-271870IPR009057Homeodomain-like
CDDcd001675.06E-162061No hitNo description
SMARTSM007171.0E-1368116IPR001005SANT/Myb domain
PROSITE profilePS5129417.6668118IPR017930Myb domain
PfamPF002497.0E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-1971116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGNFRGNSSD SEKSCHRGHW RPAEDEKLER LVEQYGPKNW NFIAQHLQGR SGKSCRLRWY  60
NQLDPNINKK PFTEEEEEIL LTAHGIQGNK WASIARLFPG RTDNAVKNHY HVIMARRKRE  120
KLLIYSKRTG QGNPDHSNKN NVGGKFDGFL RPQSTSDSKL GFCRFQVTRD RQGFSLLSSS  180
NSSPSWLSGR GSTITNDSSG YYDGFGRARK DYVRASDQDE LAKKGCSNFI GPKAVHVHHS  240
FTFSNFGSEG ETCRRGLVKF SDNRSALWNL HIVSQGEGSI KHKDIPLIDF LGVGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-34171177107B-MYB
1gv2_A1e-34171174104MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-341711758158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-341711758158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-34171174104C-Myb DNA-Binding Domain
1msf_C1e-34171174104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048400.20.0PREDICTED: transcriptional activator Myb
TrEMBLA0A061DJM00.0A0A061DJM0_THECC; Myb domain protein 69, putative
STRINGEOX925570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.15e-68myb domain protein 69
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]