PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001442t1
Common NameTCM_001442
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 349aa    MW: 38307.2 Da    PI: 4.4713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001442t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.2e-4761341129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtd elv++yLk+kv gkkl + e+i+e+diyk+ PwdLp  +++k+++ +w+fF++ +kk a+g + nrat  g+Wk+tgkd++
  Thecc1EG001442t1   6 LAPGFRFHPTDVELVKYYLKRKVLGKKLAF-EAIAELDIYKYAPWDLPdfSCLKTGDLKWFFFCPIEKKCARGVKFNRATMYGFWKTTGKDRT 97 
                       579************************999.89***************6448889999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       v+  ++++vg+ ktLvf++g+ap g +tdWvmheyrle
  Thecc1EG001442t1  98 VTY-NDAVVGMIKTLVFHQGKAPCGDRTDWVMHEYRLE 134
                       ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-554156IPR003441NAC domain
PROSITE profilePS5100550.786156IPR003441NAC domain
PfamPF023654.0E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKNWLAPGF RFHPTDVELV KYYLKRKVLG KKLAFEAIAE LDIYKYAPWD LPDFSCLKTG  60
DLKWFFFCPI EKKCARGVKF NRATMYGFWK TTGKDRTVTY NDAVVGMIKT LVFHQGKAPC  120
GDRTDWVMHE YRLEEKELAD RGVVQDTYVL CVVFKKDGMG PRNGAQYGAP FKEEDWSDDE  180
DVNLVGTGSL SGMSTLAVGG ASSSCVPESL CAGASVASSG LYTLPRVVHT NAAASVTTDI  240
DSNANAAPTV VDAPQVPVVV DKAVPASTEA PQLAQVPQVQ ESNDDILSML DFFREDHAFI  300
MYDNGQVTGT ANDSFFEAPQ VSDDDDILSM LASFTEDNNL NSVLYPFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-40615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048341.20.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY824e-98NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A061DRB30.0A0A061DRB3_THECC; NAC domain containing protein 82, putative
STRINGEOX924980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-99NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]