PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001435t1 | ||||||||
Common Name | TCM_001435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25367.6 Da PI: 6.1608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.1e-09 | 119 | 159 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Thecc1EG001435t1 119 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 159 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.951 | 110 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-15 | 115 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-10 | 116 | 164 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 116 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-6 | 120 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDINQTKLPS HTWNLEMSTE DHILHEQVPL NPIWPSYPLQ THQTPSSTSS QIPSATNVYS 60 DQMGQLAEEE EETEEELSAM KEMLYKIAAM QPVDIDPATI RKPKRRNVRI SDDPQSVAAR 120 HRRERISEKI RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQPNN QQPPCHVNWQ 180 VTPNKPLVST SSTSMETQQA GPEFTFGGNG GNPLCFNHEV IND* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048332.2 | 1e-167 | PREDICTED: transcription factor HEC3 | ||||
TrEMBL | A0A061DIQ0 | 1e-166 | A0A061DIQ0_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOX92489 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4449 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 7e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001435t1 |
Entrez Gene | 18611821 |
Publications ? help Back to Top | |||
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