PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001432t1

Common Name

TCM_001432

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 947aa MW: 105115 Da PI: 8.8385

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001432t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.4e-09	203	224	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G++C+F H Thecc1EG001432t1 203 TQICKEFMA-GRCRRGSQCQFLH 224 789****.*********** PP
2	zf-CCCH	21.7	3.5e-07	266	285	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C++G++C+FaH+ Thecc1EG001432t1 266 CNDYLK-GNCRRGASCRFAHD 285 ****.***********5 PP
3	zf-CCCH	18	5.2e-06	327	347	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G C+ G C+F+H Thecc1EG001432t1 327 VPCKYYAA-GNCRNGKYCRFSH 347 599999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.4E-5	200	226	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	200	227	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-5	202	225	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.7E-7	203	225	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-6	203	224	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-4	260	286	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	260	287	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-6	263	285	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.6E-5	266	285	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0022	323	349	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.648	323	350	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	324	348	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MSVDNHTALI RIRATTFGEM SGSRKRCSKW DSKEERQYSL ENVRDAAWPA KAGVSFHDRE 60 SEHGYFSPEV GRNGNKWSFM EASDMMKSKH GLPSRESLTG GRGARKDDNI NVDCVKNWKT 120 TSPWDGDETY SMRMSPGLDD WRQQNRRHSP KSDWSRSQSF THKSRSRSWS RSRSRSRSRS 180 PVRGIRRQSG FHERTRSRSG VSTQICKEFM AGRCRRGSQC QFLHQDIQSH EDGWDNRQKK 240 AGGSKYFTPN DGKEYLIKSG RSTDCCNDYL KGNCRRGASC RFAHDGASDG FSRGSINEVS 300 RERESNKRNR VATPERDGER EARRSDVPCK YYAAGNCRNG KYCRFSHHGQ ARASPERSRG 360 DRGGWGQSLV SVDKLRDGAK FRDADASYNV EKSRNGPKWS DADASNEAEK SWAGPKWSDA 420 DASNDVDKSW TGSKWGDTGT YSGAANMSKD INGKVGASES RFPDWSMDER WQHNYDVSGK 480 SSETKVHYET VDIDKDEAIP RKIENAGLST GVSEPRGAEE SLGDMEMSPE WNYRIPSSVK 540 KETSHSSKSQ APIDTSLPAH EKDIAEEASG RVCDGLAASQ PISIQKSNFQ HDHVMRGSSA 600 VALPSDSNAA SRNSAISHID LNFSSNILQM KSFDQPGPSS SSLPYSNLKV VGQSQVAIPS 660 DSNEVNVKVT QNNLLFQEEK PSNKMNFGDT NTSNGNSGTQ STQNMVNSFA SSGGPIEPDS 720 MPTVQPGQDV TFLKQYDPIS DSIEPVKKQD TNTKPLGFSI HPVAQKNTAD GKPELSANML 780 LPSSLVGSTN GGDYHNDHSC KREPDSDSHM PNRVEPVASS EVTKENEGVE ETKKAQEENK 840 NGPSENVDAD DRTDEGKKSK DGKGIRAFKF ALVEFVKDLL KPTWKEGQIG KDAYKNIVKK 900 VVDKVTATMQ GANIPQTPEK IDQYLSFSKP KLSKLVQAYV EKFQKN*

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MSVDNHTALI RIRATTFGEM SGSRKRCSKW DSKEERQYSL ENVRDAAWPA KAGVSFHDRE  60
SEHGYFSPEV GRNGNKWSFM EASDMMKSKH GLPSRESLTG GRGARKDDNI NVDCVKNWKT  120
TSPWDGDETY SMRMSPGLDD WRQQNRRHSP KSDWSRSQSF THKSRSRSWS RSRSRSRSRS  180
PVRGIRRQSG FHERTRSRSG VSTQICKEFM AGRCRRGSQC QFLHQDIQSH EDGWDNRQKK  240
AGGSKYFTPN DGKEYLIKSG RSTDCCNDYL KGNCRRGASC RFAHDGASDG FSRGSINEVS  300
RERESNKRNR VATPERDGER EARRSDVPCK YYAAGNCRNG KYCRFSHHGQ ARASPERSRG  360
DRGGWGQSLV SVDKLRDGAK FRDADASYNV EKSRNGPKWS DADASNEAEK SWAGPKWSDA  420
DASNDVDKSW TGSKWGDTGT YSGAANMSKD INGKVGASES RFPDWSMDER WQHNYDVSGK  480
SSETKVHYET VDIDKDEAIP RKIENAGLST GVSEPRGAEE SLGDMEMSPE WNYRIPSSVK  540
KETSHSSKSQ APIDTSLPAH EKDIAEEASG RVCDGLAASQ PISIQKSNFQ HDHVMRGSSA  600
VALPSDSNAA SRNSAISHID LNFSSNILQM KSFDQPGPSS SSLPYSNLKV VGQSQVAIPS  660
DSNEVNVKVT QNNLLFQEEK PSNKMNFGDT NTSNGNSGTQ STQNMVNSFA SSGGPIEPDS  720
MPTVQPGQDV TFLKQYDPIS DSIEPVKKQD TNTKPLGFSI HPVAQKNTAD GKPELSANML  780
LPSSLVGSTN GGDYHNDHSC KREPDSDSHM PNRVEPVASS EVTKENEGVE ETKKAQEENK  840
NGPSENVDAD DRTDEGKKSK DGKGIRAFKF ALVEFVKDLL KPTWKEGQIG KDAYKNIVKK  900
VVDKVTATMQ GANIPQTPEK IDQYLSFSKP KLSKLVQAYV EKFQKN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313496	0.0	KF313496.1 Firmiana danxiaensis microsatellite a44026_SSR39 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017985430.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A061DJF7	0.0	A0A061DJF7_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1
STRING	EOX92488	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-19	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001432t1
Entrez Gene	18611820

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]