PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001265t1

Common Name

TCM_001265

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 246aa MW: 28142.8 Da PI: 9.4714

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001265t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.1e-29	157	215	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C+s gC+vkk++er+++d+++v++tY g Hnh+ Thecc1EG001265t1 157 MDDGYKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRIERDRDDTSYVITTYDGIHNHD 215 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-32	144	217	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-27	150	217	IPR003657	WRKY domain
PROSITE profile	PS50811	31.238	152	217	IPR003657	WRKY domain
SMART	SM00774	8.9E-33	157	216	IPR003657	WRKY domain
Pfam	PF03106	1.3E-22	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKQQLIKIKG KKKKERKDNS YFRSFKLLYK CIKWQHLCQT GFPCYTLSKT AVQLSFVMDF 60 SHENSNPNPS YTFFPESFDP MPEFELADYL MLDDCPFEED TSSQSMVSSE KGMGGANGFS 120 GATSRNTNII CKSGVRKNKL ELGNRVAFRT KSELEVMDDG YKWRKYGKKS VKNSPNPRNY 180 YKCSSGGCNV KKRIERDRDD TSYVITTYDG IHNHDSPYMV YYNQMPIVAP NAWNLRTSPP 240 SSSST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-25	144	217	1	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048143.2	1e-139	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	1e-45	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A061DIH4	0.0	A0A061DIH4_THECC; WRKY DNA-binding protein 51, putative
STRING	EOX92300	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	4e-48	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Thecc1EG001265t1
Entrez Gene	18611692

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]