PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001212t3 | ||||||||
Common Name | TCM_001212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 297aa MW: 33456.8 Da PI: 6.181 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.8 | 3.5e-11 | 76 | 115 | 3 | 42 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +k +rr+++NReAAr+sR+RKka++++Le+ +L + Thecc1EG001212t3 76 TDKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLVQLE 115 7899**************************9766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.6E-8 | 70 | 121 | No hit | No description |
SMART | SM00338 | 3.3E-8 | 74 | 145 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.6E-8 | 76 | 117 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.071 | 76 | 120 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.8E-7 | 78 | 119 | No hit | No description |
CDD | cd14708 | 3.51E-21 | 78 | 130 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.0E-30 | 164 | 239 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MNSPSTQFVH SRRMGIYEPI HQIGMWGENF KSNGNPNTSA SVIVEVDTKL ENESETASHE 60 MLAPSNKYDQ EATKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLENSRLK LVQLEQELER 120 ARQQGLYVGG GLEGSHLGFS GAVNSGIAAF EMEYGHWMEE QNRQICELRT ALNAHISDVE 180 LRILVESGMS HYFELFRMKS TASKADVFYV MSGMWKTSAE RFFSWIGGFR PSELLKVLVP 240 QLEPLTEQQF LEVCNLKQSC QQAEDALSQG MEKLQETVSA TVAAGQLGEG SYIPQVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048077.1 | 0.0 | PREDICTED: transcription factor TGA1 | ||||
Refseq | XP_017983090.1 | 0.0 | PREDICTED: transcription factor TGA1 | ||||
Swissprot | Q39237 | 1e-158 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A061DID0 | 0.0 | A0A061DID0_THECC; BZIP transcription factor family protein isoform 2 (Fragment) | ||||
STRING | EOX92234 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-147 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001212t3 |
Entrez Gene | 18611650 |