PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001212t1
Common NameTCM_001212
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 363aa    MW: 40893.4 Da    PI: 6.9601
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001212t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-1176115342
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                        +k +rr+++NReAAr+sR+RKka++++Le+   +L +  
  Thecc1EG001212t1  76 TDKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLVQLE 115
                       7899**************************9766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-870121No hitNo description
SMARTSM003383.3E-874145IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.07176120IPR004827Basic-leucine zipper domain
PfamPF001707.4E-876117IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-678119No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141441.4E-30164239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSPSTQFVH SRRMGIYEPI HQIGMWGENF KSNGNPNTSA SVIVEVDTKL ENESETASHE  60
MLAPSNKYDQ EATKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLENSRLK LVQLEQELER  120
ARQQGLYVGG GLEGSHLGFS GAVNSGIAAF EMEYGHWMEE QNRQICELRT ALNAHISDVE  180
LRILVESGMS HYFELFRMKS TASKADVFYV MSGMWKTSAE RFFSWIGGFR PSELLKVLVP  240
QLEPLTEQQF LEVCNLKQSC QQAEDALSQG MEKLQETVSA TVAAGQLGEG SYIPQVATAM  300
EKLEALVSFV NQADHLRQET LQQMSRILTT RQAARGLLAL GEYFQRLRAL STLWATRPRE  360
PA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048077.10.0PREDICTED: transcription factor TGA1
RefseqXP_017983090.10.0PREDICTED: transcription factor TGA1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A061DI740.0A0A061DI74_THECC; BZIP transcription factor family protein isoform 1
STRINGEOX922340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]