PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001147t1
Common NameTCM_001147
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 381aa    MW: 42143.6 Da    PI: 5.9302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001147t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-21176226256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Thecc1EG001147t1 176 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 226
                       59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.38E-34175235No hitNo description
PROSITE profilePS5103223.235176233IPR001471AP2/ERF domain
SMARTSM003802.3E-38176239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-32176234IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23176234IPR016177DNA-binding domain
PRINTSPR003673.8E-11177188IPR001471AP2/ERF domain
PfamPF008472.0E-14177226IPR001471AP2/ERF domain
PRINTSPR003673.8E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAAAIDMYNS SSSSVFSDPF REELMKALEP FMKSASSTSP LASSSSSSSS PSSSPTCSFF  60
SYPSCSYSQL TSPSQPNMYP EFCSPSSTHL FSNHGFSNYN NLMGFEQTGS IGLNQLTPSQ  120
ILQIQAQIYQ QQQQQQQQQL ASMATTSSLQ NQRLNFLSPK AVPMKRVSTP SKPTKLYRGV  180
RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGEFARL NFPHLKHQGA  240
HVSGEFGDYK PLHSSVDAKL QAICQSLQKQ GNSGKTCSVS DSKPNSVVPS QPKVEFDYPV  300
KTEELDQSPR FSDPKVENSL SSSSSPELSD ESLAGSSSPE SDISFLDFSD SKWEDNENFG  360
LEKYPSVEID WEAIRELSES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22175233160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480940.0GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds.
GenBankKP7802030.0KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047994.20.0PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A061DJP40.0A0A061DJP4_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX921510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-64ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]