PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001031t4

Common Name

TCM_001031

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 255aa MW: 28254.8 Da PI: 8.8579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001031t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	126	162	1	40
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 +r++h ++Er+RR+++N+ ++ L++++P++ + ++ s Thecc1EG001031t4 126 QRMTHIAVERNRRRQMNDYLAVLKSMMPTS---YVQRYST 162 79***************************7...3443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.00E-7	124	159	No hit	No description
SuperFamily	SSF47459	4.8E-9	124	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.775	125	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	125	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	126	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MALEAVVFQQ DPFSFGSKDF YSLGGSGSGP CSYNFGFQQE EEKAYGTEET LAKSRGVDFS 60 ATWGSSPSLM VQQQPLKEWD SNSSSPDNGF LTGGFSPAEP PAGAMSCRRK RRRTKSVKNK 120 EEIENQRMTH IAVERNRRRQ MNDYLAVLKS MMPTSYVQRY STGSTSTHRS YAAATSSQSM 180 AEKRSSSVAD VEVTMVESHA NLKILSKRHP KQLLKMVAGL HSLGLCVLHL NVTSVEHMVL 240 YSLSVKVEDN CELTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	112	RKRRR
2	108	113	RKRRRT
3	126	137	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047845.2	0.0	PREDICTED: transcription factor bHLH96 isoform X2
TrEMBL	A0A061DIC4	0.0	A0A061DIC4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3
STRING	EOX92000	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001031t4
Entrez Gene	18611503

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]