PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG001031t3 | ||||||||
Common Name | TCM_001031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 30563.4 Da PI: 7.5774 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.1 | 4.9e-11 | 126 | 162 | 1 | 40 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 +r++h ++Er+RR+++N+ ++ L++++P++ + ++ s Thecc1EG001031t3 126 QRMTHIAVERNRRRQMNDYLAVLKSMMPTS---YVQRYST 162 79***************************7...3444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.16E-7 | 124 | 159 | No hit | No description |
SuperFamily | SSF47459 | 5.38E-9 | 124 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 125 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.775 | 125 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 126 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MALEAVVFQQ DPFSFGSKDF YSLGGSGSGP CSYNFGFQQE EEKAYGTEET LAKSRGVDFS 60 ATWGSSPSLM VQQQPLKEWD SNSSSPDNGF LTGGFSPAEP PAGAMSCRRK RRRTKSVKNK 120 EEIENQRMTH IAVERNRRRQ MNDYLAVLKS MMPTSYVQRY STGSTSTHRS YAAATSSQSM 180 AEKRSSSVAD VEVTMVESHA NLKILSKRHP KQLLKMVAGL HSLGLCVLHL NVTSVEHMVL 240 YSLSVKVEDN CELTTVNEIA AAVYEMVDRF QEEAAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 112 | RKRRR |
2 | 108 | 113 | RKRRRT |
3 | 126 | 137 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047845.2 | 0.0 | PREDICTED: transcription factor bHLH96 isoform X2 | ||||
TrEMBL | A0A061DIC4 | 0.0 | A0A061DIC4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 | ||||
STRING | EOX92000 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG001031t3 |
Entrez Gene | 18611503 |
Publications ? help Back to Top | |||
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