PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001031t2
Common NameTCM_001031
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 306aa    MW: 33974.3 Da    PI: 8.5911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001031t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13126177155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ L++++P++   + ++ + a+i   A++++k+L+
  Thecc1EG001031t2 126 QRMTHIAVERNRRRQMNDYLAVLKSMMPTS---YVQRGDQASIIGGAINFVKELE 177
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.95E-13124181No hitNo description
PROSITE profilePS5088815.091125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16125191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MALEAVVFQQ DPFSFGSKDF YSLGGSGSGP CSYNFGFQQE EEKAYGTEET LAKSRGVDFS  60
ATWGSSPSLM VQQQPLKEWD SNSSSPDNGF LTGGFSPAEP PAGAMSCRRK RRRTKSVKNK  120
EEIENQRMTH IAVERNRRRQ MNDYLAVLKS MMPTSYVQRG DQASIIGGAI NFVKELEQLL  180
QSLEARKRME KRSDNSTLSS LFSDFFSFPQ YSTGSTSTHR SYAAATSSQS MAEKRSSSVA  240
DVEVTMVESH ANLKILSKRH PKQLLKMVAG LHSLGLCVLH LNVTSVEHMV LYSLSVKVED  300
NCELTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047844.20.0PREDICTED: transcription factor bHLH94 isoform X1
SwissprotQ9C7T41e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A061DHS00.0A0A061DHS0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOX920000.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]