PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001031t1
Common NameTCM_001031
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 353aa    MW: 39156.1 Da    PI: 8.577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001031t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13151202155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ L++++P++   + ++ + a+i   A++++k+L+
  Thecc1EG001031t1 151 QRMTHIAVERNRRRQMNDYLAVLKSMMPTS---YVQRGDQASIIGGAINFVKELE 202
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-12149206No hitNo description
PROSITE profilePS5088815.091150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16150216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13151215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-11151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAKISTLPST RKKSSQNSDR EKLREMALEA VVFQQDPFSF GSKDFYSLGG SGSGPCSYNF  60
GFQQEEEKAY GTEETLAKSR GVDFSATWGS SPSLMVQQQP LKEWDSNSSS PDNGFLTGGF  120
SPAEPPAGAM SCRRKRRRTK SVKNKEEIEN QRMTHIAVER NRRRQMNDYL AVLKSMMPTS  180
YVQRGDQASI IGGAINFVKE LEQLLQSLEA RKRMEKRSDN STLSSLFSDF FSFPQYSTGS  240
TSTHRSYAAA TSSQSMAEKR SSSVADVEVT MVESHANLKI LSKRHPKQLL KMVAGLHSLG  300
LCVLHLNVTS VEHMVLYSLS VKVEDNCELT TVNEIAAAVY EMVDRFQEEA AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RKRRR
2133138RKRRRT
3151162RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047844.20.0PREDICTED: transcription factor bHLH94 isoform X1
TrEMBLA0A061DHS00.0A0A061DHS0_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOX920000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2217045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-73bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]