PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000915t2

Common Name

TCM_000915

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 274aa MW: 31486.3 Da PI: 4.9313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000915t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	167	210	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Thecc1EG000915t2 167 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 210 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	164	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	167	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.61E-5	168	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.5E-15	168	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MELSQHGFLE ELLAPRRDSW TTFSTGVTEF LPNGWNFDSF DENPTLATSN LSFVGFSHPT 60 ENPSFECPFG EHQPYPFADG FTVSEMDSSY TKNDTSPFPA QEDYPSMVDD EEFGLLSSDH 120 QHSLEERKSS CKVEMEQTSN IQSFNMGLFG EKKTKTKRLE GQPSKNLMAE RRRRKRLNDR 180 LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINKLQEE ETKVGRDQVR LMSNLKELKP 240 NEVMVRNSPK REEKTILESI SAVQPNQDCC YLQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	176	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047694.1	0.0	PREDICTED: transcription factor bHLH93
TrEMBL	A0A061DI02	0.0	A0A061DI02_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRING	EOX91851	1e-180	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.2	4e-47	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Thecc1EG000915t2
Entrez Gene	18611397

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]