PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000861t1
Common NameTCM_000861
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 347aa    MW: 38385.1 Da    PI: 5.923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000861t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+ +++  G+g +W + ++++g++R++k+c++rw++yl
  Thecc1EG000861t1 14 KGPWSPEEDAKLKAYIEANGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP
2Myb_DNA-binding38.23.4e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  Thecc1EG000861t1  69 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.555962IPR017930Myb domain
SuperFamilySSF466892.21E-2511109IPR009057Homeodomain-like
SMARTSM007171.4E-111364IPR001005SANT/Myb domain
PfamPF002494.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001671.78E-81662No hitNo description
PROSITE profilePS5129421.60763117IPR017930Myb domain
SMARTSM007174.6E-1167115IPR001005SANT/Myb domain
PfamPF002497.9E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2370117IPR009057Homeodomain-like
CDDcd001672.24E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ANGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQARRA ASCLTLKQEM KRESEDYMIP GMVNQASYWP QLPAVMPLTS TNQDPQFKDQ  180
ESIRNLLVKL GGRFSDDYPQ SSASTNPMNL RYPLDVSFAQ DQLYENTMNM ISSPSSISPI  240
NSTCTSQVIN STHFNVNEAA AGPNNMFQGL DGFPAELSEL IYSLEGFCGT DNMVDGSSTG  300
TSSVESSSWG DINSLGYPQI VSGFEACQQS MPQVSTFDES SYFGPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971813.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-90RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A061DPB30.0A0A061DPB3_THECC; Myb domain protein 84, putative
STRINGEOX917830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-77myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]