PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000835t1 | ||||||||
Common Name | TCM_000835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 187aa MW: 21691.4 Da PI: 10.1585 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.3 | 5.1e-11 | 78 | 123 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++l Thecc1EG000835t1 78 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRIENRELTNRLR 123 5789*************************************98775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-12 | 74 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 76 | 122 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.04E-11 | 78 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-9 | 78 | 149 | No hit | No description |
Pfam | PF00170 | 2.0E-8 | 78 | 123 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 7.37E-20 | 79 | 130 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MMSTVPANVS PEPMLSNDLF PAFESGFTPW DCSELFSTTL STGPARSGSG SDEPNQNQTN 60 SNSGSDEPNQ LVSIIDERKR RRMISNRESA RRSRMRKQKH LENLRNQVNR LRIENRELTN 120 RLRFVLYHCH RVRTDNDRLR SEYSMLQQKF WDIRQILLFK QLQQFSSAWP CNNVTAMSEQ 180 TPPLIT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 81 | RKRRR |
2 | 77 | 98 | RKRRRMISNRESARRSRMRKQK |
3 | 90 | 97 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047594.1 | 1e-136 | PREDICTED: bZIP transcription factor 11 | ||||
TrEMBL | A0A061DIP8 | 1e-135 | A0A061DIP8_THECC; Basic leucine-zipper 5, putative | ||||
STRING | EOX91751 | 1e-135 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49760.1 | 5e-47 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000835t1 |
Entrez Gene | 18611325 |
Publications ? help Back to Top | |||
---|---|---|---|
|