PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000807t3
Common NameTCM_000807
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 293aa    MW: 31536.4 Da    PI: 10.4273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000807t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11555146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
  Thecc1EG000807t3  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                      79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.54161IPR017930Myb domain
SuperFamilySSF466898.22E-16271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-14456IPR009057Homeodomain-like
SMARTSM007177.0E-8459IPR001005SANT/Myb domain
PfamPF002495.2E-8555IPR001005SANT/Myb domain
CDDcd116602.35E-18657No hitNo description
PROSITE profilePS5150424.629115186IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.0E-14116181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.72E-16116195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-14121188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.1E-9123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL ALKRNQLTAK HDDNPAAVIT VPPSEEVVDA KPLAISSGTP RATGPKKPIS  120
RLENILLEAI TSLKEPGGSD RASIAVYIEE KYAAPPNLKK LLATKLKLLV ANGTLIKIKH  180
KYRIAPRSTV SEARRSPLLL LEGRQKDSSK LDKKGINILT KSQVDAELSK MRSMTAEEAA  240
AAAARAVAEA EVAIAEAEEA AREAEAAEAE AEAAKIFAKA AEKALKARML DT*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047553.10.0PREDICTED: telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW52e-85TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A061DIM40.0A0A061DIM4_THECC; Homeodomain-like/winged-helix DNA-binding family protein isoform 1
STRINGEOX917120.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.26e-77MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]