PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000764t1
Common NameTCM_000764
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 457aa    MW: 50905.3 Da    PI: 5.5526
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000764t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.12e-94534532373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsP 89 
                       ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+  s+++k l++ ++++ n s  ++ +++     f++++P
  Thecc1EG000764t1  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--SGTCKMLAAMANAHCNLSIDIHTFSVielasFVDLTP 143
                       79****************************************************..8899999888888888666666665556688****** PP

              GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                       +++f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp l++T+ g ++++       ++ee+g++L +fA++ +v +ef
  Thecc1EG000764t1 144 WHRFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLLKLTVAGGATEDippmLDLSYEELGSKLVNFARSRNVMLEF 236
                       ************************************************************9999998888899******************** PP

              GRAS 179 nvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqea 246
                       +v+   +a+ +++l +e+Lrv++      gEal++n++++lh+++                 e+ s++s r+ +Lk++++l P+vvv+v+++a
  Thecc1EG000764t1 237 RVVastYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYIPeetlsplpnansnlysFEPSSTSSFRTMFLKALRGLDPTVVVLVDEDA 328
                       **977634444444.56666655555569*******************************98888888999********************** PP

              GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                       d++s++++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r+ r e +++W +r+++a F+ ++++e+a++++k+
  Thecc1EG000764t1 329 DLTSNNLVCRLRSAFNYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVDRLEPKSRWVQRMRNANFRGLSFGEDAVSEVKT 420
                       ******************************************.************************************************** PP

              GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       +l +++  g+  ++e++ lvl+Wk++++v+++aW
  Thecc1EG000764t1 421 MLDEHA-AGWGFKKEEDDLVLTWKGHNVVFATAW 453
                       ******.55666677778**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.31426435IPR005202Transcription factor GRAS
PfamPF035147.0E-9253453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMQFTETPPQ PLHQITPFSI PTMNKNQIHR ARPWPGFPTS KGLGSFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCAFLRAL IVRAAKSGTC KMLAAMANAH  120
CNLSIDIHTF SVIELASFVD LTPWHRFGFT AANAAILEAV EGYSVIHIVD LSLTHCMQIP  180
TLIDAIANRL EGPPLLKLTV AGGATEDIPP MLDLSYEELG SKLVNFARSR NVMLEFRVVA  240
STYADGFSSL IEQLRVQHLV YAESGEALVI NCHMMLHYIP EETLSPLPNA NSNLYSFEPS  300
STSSFRTMFL KALRGLDPTV VVLVDEDADL TSNNLVCRLR SAFNYLWIPY DTVDTFLPQG  360
SKQRQWYEAD ICWKIENVIA HEGLQRVDRL EPKSRWVQRM RNANFRGLSF GEDAVSEVKT  420
MLDEHAAGWG FKKEEDDLVL TWKGHNVVFA TAWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-454745582474Protein SHORT-ROOT
5b3h_B4e-454745528420Protein SHORT-ROOT
5b3h_E4e-454745528420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047483.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A061DGZ90.0A0A061DGZ9_THECC; SCL domain class transcription factor
STRINGEOX916400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]