PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000696t1
Common NameTCM_000696
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 313aa    MW: 34029.4 Da    PI: 7.8416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000696t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.2e-201661147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Thecc1EG000696t1 16 KGPWSPEEDDLLQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                      79******************************.***********985 PP
2Myb_DNA-binding57.33.6e-1870112347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Thecc1EG000696t1  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.3081166IPR017930Myb domain
SuperFamilySSF466891.95E-3213109IPR009057Homeodomain-like
SMARTSM007177.5E-181564IPR001005SANT/Myb domain
PfamPF002496.6E-201661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-271769IPR009057Homeodomain-like
CDDcd001677.44E-171860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.46768117IPR017930Myb domain
CDDcd001672.15E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370116IPR009057Homeodomain-like
PfamPF002491.2E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAITSTSNRK EMDRIKGPWS PEEDDLLQKL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCLSV  120
GEECNFITNG GYDGNLRGEE QQPLKRSVSA GLYMSPGSPS GSDVSDSSVP VLSSSHVYKP  180
IPRSGGVNVD VNVDVNVMPA GVEAASSSND PPTSLSLSLP GAESCEVSTH PVSESTQMRN  240
EAKNEERVGG VMGFSSEFMA VMQEMIRVEV RNYMVQMQQQ NGGVAGGGMG MCLDGGFRNV  300
MAMNRVGVSK IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-41151173105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-41151173105C-Myb DNA-Binding Domain
1msf_C3e-41151173105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047395.20.0PREDICTED: transcription factor MYB44
SwissprotO231601e-112MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A061DHA00.0A0A061DHA0_THECC; Myb domain protein 73, putative
STRINGEOX915520.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-101myb domain protein 73
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]