PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000680t4 | ||||||||
Common Name | TCM_000680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 34451.9 Da PI: 10.3213 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.3 | 2e-10 | 277 | 296 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr Thecc1EG000680t4 277 DDYSWRKYGQKPIKGSPHPR 296 99*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.7E-18 | 228 | 273 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-10 | 263 | 297 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.117 | 270 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-8 | 272 | 297 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0013 | 275 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.4E-7 | 277 | 297 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAVELMMSYR NSNSFTTKME ENAVQEAASG LESVEKLIRL LSQTQQQQQQ NITNQEKYQS 60 SSSSTRSSLD LDMDCKAAAD VAVSKFKKVI SLLGRTRTGH ARFRRAPVAP PAATNTTTIS 120 PPVSQNQANQ ELETKVYYAT PIQQIPPPVT YHTHHHQDFL TVKSGVLERK DSSTTINFSY 180 SSAGNSFMSS LTGDTDSKQP SSSSAFQITN LSQVSSAGKP PLSSSSFKRK CSSENLGSGK 240 CSGSSGRCHC SKKRKLRSKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK GSPHPRYMIF 300 HAIFYIFVSF LS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF313494 | 0.0 | KF313494.1 Firmiana danxiaensis microsatellite a837_SSR37 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047365.2 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
TrEMBL | A0A061DGJ4 | 0.0 | A0A061DGJ4_THECC; WRKY DNA-binding protein 7 isoform 4 | ||||
STRING | EOX91522 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 2e-34 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000680t4 |
Entrez Gene | 18611185 |
Publications ? help Back to Top | |||
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