PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000680t2
Common NameTCM_000680
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 349aa    MW: 38201.9 Da    PI: 9.9929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000680t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32277334359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Thecc1EG000680t2 277 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGEHNHP 334
                       99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-17228273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-33263334IPR003657WRKY domain
PROSITE profilePS5081131.445270336IPR003657WRKY domain
SuperFamilySSF1182901.96E-27272335IPR003657WRKY domain
SMARTSM007742.9E-39275335IPR003657WRKY domain
PfamPF031061.1E-27277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAVELMMSYR NSNSFTTKME ENAVQEAASG LESVEKLIRL LSQTQQQQQQ NITNQEKYQS  60
SSSSTRSSLD LDMDCKAAAD VAVSKFKKVI SLLGRTRTGH ARFRRAPVAP PAATNTTTIS  120
PPVSQNQANQ ELETKVYYAT PIQQIPPPVT YHTHHHQDFL TVKSGVLERK DSSTTINFSY  180
SSAGNSFMSS LTGDTDSKQP SSSSAFQITN LSQVSSAGKP PLSSSSFKRK CSSENLGSGK  240
CSGSSGRCHC SKKRKLRSKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERALDDP SMLIVTYEGE HNHPLSLAET SSLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212723351476Probable WRKY transcription factor 4
2lex_A3e-212723351476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3134940.0KF313494.1 Firmiana danxiaensis microsatellite a837_SSR37 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047365.20.0PREDICTED: probable WRKY transcription factor 15
SwissprotQ9STX03e-93WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A061DH710.0A0A061DH71_THECC; WRKY DNA-binding protein 7 isoform 1
STRINGEOX915220.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-64WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]