PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000680t1 | ||||||||
Common Name | TCM_000680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 38201.9 Da PI: 9.9929 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.1e-32 | 277 | 334 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Thecc1EG000680t1 277 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGEHNHP 334 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.1E-17 | 228 | 273 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 263 | 334 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.445 | 270 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 272 | 335 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-39 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-27 | 277 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MAVELMMSYR NSNSFTTKME ENAVQEAASG LESVEKLIRL LSQTQQQQQQ NITNQEKYQS 60 SSSSTRSSLD LDMDCKAAAD VAVSKFKKVI SLLGRTRTGH ARFRRAPVAP PAATNTTTIS 120 PPVSQNQANQ ELETKVYYAT PIQQIPPPVT YHTHHHQDFL TVKSGVLERK DSSTTINFSY 180 SSAGNSFMSS LTGDTDSKQP SSSSAFQITN LSQVSSAGKP PLSSSSFKRK CSSENLGSGK 240 CSGSSGRCHC SKKRKLRSKR VVRVPAISLK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK 300 CSSVRGCPAR KHVERALDDP SMLIVTYEGE HNHPLSLAET SSLILESS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 272 | 335 | 14 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 272 | 335 | 14 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF313494 | 0.0 | KF313494.1 Firmiana danxiaensis microsatellite a837_SSR37 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047365.2 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
Swissprot | Q9STX0 | 3e-93 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A061DH71 | 0.0 | A0A061DH71_THECC; WRKY DNA-binding protein 7 isoform 1 | ||||
STRING | EOX91522 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-64 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000680t1 |
Entrez Gene | 18611185 |
Publications ? help Back to Top | |||
---|---|---|---|
|