PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000663t1 | ||||||||
Common Name | TCM_000663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 14429.4 Da PI: 11.716 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4e-18 | 5 | 91 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+l++ dv +++ l+lp k++++ g+ + l ++d +g +W +++++ rk+ + vl+ GW +Fvk++ L+ gD ++Fk++ Thecc1EG000663t1 5 FTKKLSKTDVVEKR-LSLPTKYMKHLpGLRRGHAVNLPVMDVHGTEWHFRYSIrRKGHPKPVLSMGWGNFVKSKCLRPGDRIIFKMEA 91 89*********996.********555*99999999****************884444445*************************764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.32E-17 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.95E-20 | 4 | 90 | No hit | No description |
PROSITE profile | PS50863 | 11.082 | 4 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-20 | 4 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-5 | 5 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 5 | 91 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MALHFTKKLS KTDVVEKRLS LPTKYMKHLP GLRRGHAVNL PVMDVHGTEW HFRYSIRRKG 60 HPKPVLSMGW GNFVKSKCLR PGDRIIFKME ANVAAAPGPL YIIGVKRRMR LLGKEVWTAV 120 FLKRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472265.1 | 2e-55 | PREDICTED: B3 domain-containing transcription factor VAL3-like | ||||
TrEMBL | A0A061DI23 | 3e-86 | A0A061DI23_THECC; Uncharacterized protein | ||||
STRING | EOX91491 | 6e-87 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22071 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35520.1 | 1e-09 | auxin response factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000663t1 |
Entrez Gene | 18611169 |
Publications ? help Back to Top | |||
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