PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000649t1
Common NameTCM_000649
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 452aa    MW: 49131.2 Da    PI: 4.9876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000649t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16208254455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Thecc1EG000649t1 208 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 254
                       6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-20201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-20201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-17207258No hitNo description
PfamPF000103.1E-13208254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGLYFPSFET CLILNQNVDA VITAGNHWLT KMTSFGELAQ ACLALPAKNM FPLSLSFLLS  60
NCNNKTPPPT INSFPVVFVQ ETECQNRRDD DISNLLHQIL VHSSSPSSGM AYLEGPTENP  120
RRLSRSPAPA GGEAKQGMIL TVDSCGRGSG GSGLVGVAGE INDAEEYDCE SEFESCHKQE  180
GLEALVDEAP SKPAPPRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA  240
SMLDEAIEYL KQLQLQVQML TMRNGLSLHP MCLPGVLQPI QLPQTRIDFG EDNGSLPMNA  300
SGTAPANQEP SAQIVFDLPN QCSSSNHALV PNMSNIITSE TSFSLESIQA PFGPFQLLTP  360
TQDICREDIL PHHQLKSNTS EFGSGATSTV SLPFDTRESD LKESSSLDAS MKGRDQPNSV  420
LEHDLVLAPH LTRQAGRSDS SDDIKIEKPN F*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6796154e-68AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds.
GenBankKP6894114e-68KP689411.1 Prunus pseudocerasus isolate Unigene12366 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982070.10.0PREDICTED: transcription factor SPATULA isoform X1
TrEMBLA0A061DI040.0A0A061DI04_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOX914610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-52bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]