PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000649t1 | ||||||||
Common Name | TCM_000649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 452aa MW: 49131.2 Da PI: 4.9876 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.3 | 9e-16 | 208 | 254 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Thecc1EG000649t1 208 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 254 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-20 | 201 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-20 | 201 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.74E-17 | 207 | 258 | No hit | No description |
Pfam | PF00010 | 3.1E-13 | 208 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MGLYFPSFET CLILNQNVDA VITAGNHWLT KMTSFGELAQ ACLALPAKNM FPLSLSFLLS 60 NCNNKTPPPT INSFPVVFVQ ETECQNRRDD DISNLLHQIL VHSSSPSSGM AYLEGPTENP 120 RRLSRSPAPA GGEAKQGMIL TVDSCGRGSG GSGLVGVAGE INDAEEYDCE SEFESCHKQE 180 GLEALVDEAP SKPAPPRSSS KRSRAAEVHN LSEKRRRSRI NEKMKALQNL IPNSNKTDKA 240 SMLDEAIEYL KQLQLQVQML TMRNGLSLHP MCLPGVLQPI QLPQTRIDFG EDNGSLPMNA 300 SGTAPANQEP SAQIVFDLPN QCSSSNHALV PNMSNIITSE TSFSLESIQA PFGPFQLLTP 360 TQDICREDIL PHHQLKSNTS EFGSGATSTV SLPFDTRESD LKESSSLDAS MKGRDQPNSV 420 LEHDLVLAPH LTRQAGRSDS SDDIKIEKPN F* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY679615 | 4e-68 | AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds. | |||
GenBank | KP689411 | 4e-68 | KP689411.1 Prunus pseudocerasus isolate Unigene12366 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982070.1 | 0.0 | PREDICTED: transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A061DI04 | 0.0 | A0A061DI04_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOX91461 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4199 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000649t1 |
Entrez Gene | 18611155 |
Publications ? help Back to Top | |||
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