PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000558t1 | ||||||||
Common Name | TCM_000558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 42036.1 Da PI: 6.1341 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105 | 4.3e-33 | 237 | 292 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Thecc1EG000558t1 237 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 292 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.672 | 234 | 294 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-30 | 234 | 295 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.64E-19 | 235 | 295 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.0E-27 | 237 | 292 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-8 | 239 | 290 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MELSLDLGLA YVPKSISEFL KEVSNIKNGF QRLSKISDYV KRLEDEMKKI DAFKRELPLC 60 MLLLKDGIER LKEEEMQCKE MSDGSVTEEL MLPSKRNTEE NRRANMEDDG GDMKNWMSSV 120 QLWNSNFNNV DHNKKANAVQ ELKLRSEDED LSEKPIELCN NKSWGGAFVP FKGQDDKEIS 180 GLSLMTPSSE LASGNPILKS DSSCRIGSGS SLYTEQNQIK FQTKSQHQQQ QQQNSRKQRR 240 CWSPELHRRF VDALQQLGGS QVATPKQIRE LMQVDGLTND EVKSHLQKYR LHIRKLPPSS 300 AGQGNGLWSA QNQCSEHMKA NISQSGSPQG PLLATGSAKD MSSTGGDSME AEEDEKSDGH 360 SWRGGVHKQG EIDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ837700 | 2e-60 | JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047162.2 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
TrEMBL | A0A061DG45 | 0.0 | A0A061DG45_THECC; Homeodomain-like superfamily protein, putative | ||||
STRING | EOX91319 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4922 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 7e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000558t1 |
Entrez Gene | 18611076 |
Publications ? help Back to Top | |||
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