PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000549t1

Common Name

TCM_000549

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 329aa MW: 34728.5 Da PI: 8.8376

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000549t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	7.9e-39	59	118	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Thecc1EG000549t1 59 ENQNLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 118 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-26	59	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	61	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.422	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MIQELLGGAG LIGGERKISI GGSILEGTPT ATPSPSPSSS TTSSSTTTTT NSTAPPNSEN 60 QNLRCPRCDS PNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKNTTV 120 SASVGKSSAA KMKTVASEIG RSGLGNGFDH EIQSSPILWA SPQSSHFLAL LRTTQNPNPS 180 TLSNSVSIKE EVSLLGSHMM NEPAAVSTGA LNARTLGLDP LSQVPSLGLC SPFWKNNQHQ 240 AQQHQQNNGF LLGEVQNTGI QELYQRLKSS ASYYSDSSAV VLSNVASSSS SSSSILESAP 300 VAGGELGYWN PVFSSSWSDL PTTNGAYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047150.2	0.0	PREDICTED: dof zinc finger protein DOF5.7
TrEMBL	A0A061DGR6	0.0	A0A061DGR6_THECC; F-box family protein
STRING	EOX91307	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000549t1
Entrez Gene	18611067

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]