PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000519t1 | ||||||||
Common Name | TCM_000519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 891aa MW: 100601 Da PI: 9.4524 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.2e-20 | 23 | 113 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fkv +++ g l +p +f++++g + s ++le +sg +W+v+l +k+++r++l+kGW+eF++ n L+ g f+vF+++g+ f +v Thecc1EG000519t1 23 FKVI-LDETFRDGKLGIPTNFVRKYGRQ--LSSPIRLEVPSGAVWQVEL--TKCDERVWLQKGWQEFAEHNSLEYGYFLVFRYEGNAHF--HV 108 4544.245677789***********977..5567***************..********************************998888..** PP EEE-S CS B3 95 kvfrk 99 +f++ Thecc1EG000519t1 109 LIFDT 113 *9997 PP | |||||||
2 | B3 | 59 | 8.3e-19 | 221 | 318 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f v+ ps+v+ s r+++p fa+++ + +++ ++l+ +sg+sW k+ + r l++GW+eF+k n L++gD++vF+l+++ e Thecc1EG000519t1 221 FMVVMQPSYVSFSYRMSVPDGFARKYFKMTQG--NVILRISSGQSWPAKYYCrpNIDNPRAQLRDGWQEFAKHNALEVGDVCVFELTRTsPEI 311 778999********************644333..6***************545644444588************************9875666 PP ..EEEEE CS B3 91 elvvkvf 97 l+v ++ Thecc1EG000519t1 312 LLKVVIC 318 5666666 PP | |||||||
3 | B3 | 58.2 | 1.5e-18 | 488 | 584 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrs 88 f v+ ps+vl g l++p +f++++ +k+ + ++tl+ ++gr+W v ++ +++ + ++ W+ Fv +n+Lk+gD++vF+l++ + Thecc1EG000519t1 488 FTVVMQPSYVLPGGSLSIPSQFVKRYFKKN-G--EVTLRVSDGRTWIVDYNG--EGDGqcpkgKFRSRSWRAFVLDNNLKVGDVCVFELIKAN 575 778999********************7552.3..7***************54..44443444578889*********************9877 PP EE..EEEEE CS B3 89 efelvvkvf 97 + ++ v +f Thecc1EG000519t1 576 GNSFDVVIF 584 666666665 PP | |||||||
4 | B3 | 56.5 | 5.1e-18 | 740 | 834 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 f+ v ps+ +++ +++p +fa+++ k++++ + +l ++g+sW+vk+ y + + +++GWk+F+ +n+L +gD++vF+l + Thecc1EG000519t1 740 FLVVIQPSHISRNYKMCIPSNFARKYFTKTHGG-ETVLCLSDGKSWSVKY-YrrgdD----GnprGQFSGGWKKFALDNNLVVGDVCVFELLK 826 566777889999999***********7666665.66667779********.624443....335555889********************875 PP SSEE..EEEE CS B3 87 rsefelvvkv 96 + +kv Thecc1EG000519t1 827 G--ADISFKV 834 3..3334555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-28 | 13 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-27 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.46E-23 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 14.974 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-20 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-17 | 24 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-24 | 214 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-23 | 215 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.48E-24 | 219 | 319 | No hit | No description |
SMART | SM01019 | 5.0E-9 | 221 | 321 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.817 | 221 | 319 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-17 | 221 | 319 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-23 | 480 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-20 | 481 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.32E-24 | 486 | 585 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 488 | 587 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-16 | 488 | 587 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-17 | 488 | 583 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-24 | 732 | 835 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-24 | 733 | 829 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.42E-26 | 738 | 835 | No hit | No description |
SMART | SM01019 | 3.9E-17 | 740 | 838 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-16 | 740 | 829 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.48 | 740 | 838 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MTSHQRRSDN EHSMFTSKTP HFFKVILDET FRDGKLGIPT NFVRKYGRQL SSPIRLEVPS 60 GAVWQVELTK CDERVWLQKG WQEFAEHNSL EYGYFLVFRY EGNAHFHVLI FDTSASEIEY 120 PHTNTTEEDD GFDNALVCKK SKGKSDIPYP QPHKEMKVDS PNEIGTHLKS KISAPAAMGG 180 GVSGQRSPQI EVLETVGHLT ADEKTKALQK ASGFKTKNPF FMVVMQPSYV SFSYRMSVPD 240 GFARKYFKMT QGNVILRISS GQSWPAKYYC RPNIDNPRAQ LRDGWQEFAK HNALEVGDVC 300 VFELTRTSPE ILLKVVICKR FFEDAIAARP LAGGSIAYRV KKRRLFSDTE TNCLQNQPAI 360 REYRVPKTEQ NENIHTSIEI LDDFPLNQIT KKKLPFPGFQ PCRMMKTNPS QVKGIELGKQ 420 KTSLDFQYST NELGGEFKFS GKDESVGMSG AQRCSKPDFL GRMQPLTTTE KKIALKRAMA 480 FKSANPSFTV VMQPSYVLPG GSLSIPSQFV KRYFKKNGEV TLRVSDGRTW IVDYNGEGDG 540 QCPKGKFRSR SWRAFVLDNN LKVGDVCVFE LIKANGNSFD VVIFPDANIA SCSSSKLDSR 600 YQCKEAEDEG SIEILECTAP CQKTREKSSI QCPRPQKMMK INMINKTEKI LESEYIDPRF 660 RPFCNKACGI KLEEPKGSTS SSCCKQEVGL KPATRTGTST EKGWECPEQA EILRSQKLTA 720 KVKAKTLRIA KAFNSKNPFF LVVIQPSHIS RNYKMCIPSN FARKYFTKTH GGETVLCLSD 780 GKSWSVKYYR RGDDGNPRGQ FSGGWKKFAL DNNLVVGDVC VFELLKGADI SFKVLRDIHA 840 RPRQLLLQTF DSSEESCSRL ICILAVWTYH LSLSRNILSQ IQKCNPSSCE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-20 | 199 | 834 | 23 | 137 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-20 | 199 | 834 | 23 | 137 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A061DMT4 | 0.0 | A0A061DMT4_THECC; Uncharacterized protein | ||||
STRING | EOX91273 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18375 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000519t1 |
Entrez Gene | 18611042 |
Publications ? help Back to Top | |||
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