PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000516t1 | ||||||||
Common Name | TCM_000516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 568aa MW: 64464.3 Da PI: 9.9003 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.1e-18 | 21 | 113 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ + + +l+ g l +p kf++++g+ ++ l+ ++g++W+v+l +k++g+++l++GW+eF + L+ g f+vF+++g+ +f + Thecc1EG000516t1 21 FFKIIL-PETLRDGKLGIPTKFVKKYGNGMSSP--ALLKVPNGEVWKVEL--TKSDGKVWLKNGWQEFLNHYSLEYGHFLVFRYEGNCNF--H 106 556554.45677788***********7665555..89999**********..**********************************9999..9 PP EEEE-SS CS B3 94 vkvfrks 100 v +f++s Thecc1EG000516t1 107 VIIFDRS 113 9999985 PP | |||||||
2 | B3 | 63.5 | 3.2e-20 | 239 | 334 | 1 | 96 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 f+ v+ ps+v+ + +rl +p++f+++h +k+ + + l +++g++W+v + r k ++ l++GWk F+++n++++gD++vF+l++ + Thecc1EG000516t1 239 FLLVMQPSYVGFKstCRLAIPNNFVRKHLMKEDC--VVNLCNSNGKTWTVSFHCREKERKlnASLQSGWKTFANDNNIQVGDVCVFELTN--C 327 677889999987777*************877656..7***************77666666889************************854..4 PP E..EEEE CS B3 90 felvvkv 96 e +kv Thecc1EG000516t1 328 IEISFKV 334 4455554 PP | |||||||
3 | B3 | 61.3 | 1.6e-19 | 386 | 482 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f vl ps+v+ ++ l++p kfa+++ +kk + +++l+ ++g+sW vk+ ++s r l +GW++Fv +n+L++g ++vF+l++ e+ Thecc1EG000516t1 386 FAVVLQPSYVHLNK-LSVPEKFARKFFKKK--HNEVILRLSNGKSWPVKY--YQHSIRtpsAKLCNGWRKFVLDNKLEVGNVCVFELTEGIET 473 56677777777776.***********8674..458***************..33333334588999********************9987666 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++v+++rk Thecc1EG000516t1 474 SFKVTIYRK 482 689999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-27 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-26 | 15 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-21 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 13.958 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-21 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-15 | 22 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-25 | 231 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-24 | 232 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.36E-23 | 237 | 337 | No hit | No description |
Pfam | PF02362 | 3.7E-18 | 239 | 333 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-11 | 239 | 340 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 241 | 340 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-28 | 377 | 482 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-25 | 379 | 482 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.92E-17 | 384 | 481 | No hit | No description |
PROSITE profile | PS50863 | 14.677 | 385 | 483 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-15 | 386 | 483 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-18 | 387 | 482 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MASSHRKGND HSTFTTESPH FFKIILPETL RDGKLGIPTK FVKKYGNGMS SPALLKVPNG 60 EVWKVELTKS DGKVWLKNGW QEFLNHYSLE YGHFLVFRYE GNCNFHVIIF DRSASEIEYP 120 YTSNNHGQHK ELPEEKIEES EGDNSIQILE DIAPSRKTRE KSHLSCLRPH KMMRSTNSAN 180 KTESNLKSES LFPQFRHDGS PARKGDKSTS RHRIQKLKAD NKAKALQRAR AFKSENPFFL 240 LVMQPSYVGF KSTCRLAIPN NFVRKHLMKE DCVVNLCNSN GKTWTVSFHC REKERKLNAS 300 LQSGWKTFAN DNNIQVGDVC VFELTNCIEI SFKVCIYQGK TDVFHPVKRN AGKSSTGQDY 360 QKPLNAFEKA KAIQIASAFR SENPSFAVVL QPSYVHLNKL SVPEKFARKF FKKKHNEVIL 420 RLSNGKSWPV KYYQHSIRTP SAKLCNGWRK FVLDNKLEVG NVCVFELTEG IETSFKVTIY 480 RKQAIEDANL GSSLADKSTE NQVESKVSLV INVDSDSVHD NGNMNQEAQN LNFSGLRPFI 540 VSQVLTGLKL TLNEVKNGSS SKFEEMV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-15 | 361 | 481 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-15 | 361 | 481 | 24 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972198.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A061DG54 | 0.0 | A0A061DG54_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | EOX91270 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000516t1 |
Entrez Gene | 18611039 |
Publications ? help Back to Top | |||
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