PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000513t1

Common Name

TCM_000513

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 421aa MW: 48415.1 Da PI: 9.7725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000513t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.7	1.2e-19	33	120	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fk++ ++ ++l++p+kf++++ ++ s t+ l+ +sg W v++ ++ +++v+++GW++Fvk++ L + DfvvF++dg+s+f +v Thecc1EG000513t1 33 FKIM--IGDFR-NQLRIPRKFMSNFREN--LSGTVYLRGPSGFMWAVEV--ERMFDEVVFGNGWQNFVKDHSLADADFVVFRYDGNSTF--NV 116 5555..44454.56******877755..788************..********************************9999..78 PP EEE- CS B3 95 kvfr 98 +f+ Thecc1EG000513t1 117 VIFD 120 7776 PP
2	B3	38.6	2e-12	303	385	3	88
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 v++p +v k + + k ++ h +k + + l ++ ++W v++ ++ r +++GW +Fv +n+L+e D++vF+l+++ Thecc1EG000513t1 303 IVMKPTHVCKAFTVNIREKWLDMHVPDKVR-IALLRVAPDEKRWPVRIMR--TKWRRGFARGWGKFVLDNNLEEHDVCVFELNEEG 385 577788888888888888888888444444.2333345999*****44..44444589*******************98753 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-26	24	124	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-26	25	124	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.522	29	122	IPR003340	B3 DNA binding domain
CDD	cd10017	4.21E-19	32	120	No hit	No description
Pfam	PF02362	1.1E-16	32	120	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-17	32	122	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.3E-18	292	400	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-16	294	400	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.18E-14	299	400	No hit	No description
PROSITE profile	PS50863	10.997	301	402	IPR003340	B3 DNA binding domain
SMART	SM01019	2.7E-5	301	390	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-9	302	386	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MQSQGMAPKS QNCRMMEKHK YWKEFQSNRH QFFKIMIGDF RNQLRIPRKF MSNFRENLSG 60 TVYLRGPSGF MWAVEVERMF DEVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD 120 LSGCEREGSY FVKKHTSACS NGRCGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGKGNT 180 ISKAVDTISQ LKATQEKHLR VGKSAIASGV IEILMDESEE SSGSATEASE DWSNNSVSLK 240 CKSKKKEVGC LTNDSGKMKR PLDLPGSYNL YFISNRRKIT EEEKQRPRRL AKQYSSTRPS 300 FSIVMKPTHV CKAFTVNIRE KWLDMHVPDK VRIALLRVAP DEKRWPVRIM RTKWRRGFAR 360 GWGKFVLDNN LEEHDVCVFE LNEEGQANKK SIGFNVVIFR VLDEIVPLTR FSNTQPNASD 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MQSQGMAPKS QNCRMMEKHK YWKEFQSNRH QFFKIMIGDF RNQLRIPRKF MSNFRENLSG  60
TVYLRGPSGF MWAVEVERMF DEVVFGNGWQ NFVKDHSLAD ADFVVFRYDG NSTFNVVIFD  120
LSGCEREGSY FVKKHTSACS NGRCGFRRED GEGSEEVIDL DKVHENHMQK EKLTKGKGNT  180
ISKAVDTISQ LKATQEKHLR VGKSAIASGV IEILMDESEE SSGSATEASE DWSNNSVSLK  240
CKSKKKEVGC LTNDSGKMKR PLDLPGSYNL YFISNRRKIT EEEKQRPRRL AKQYSSTRPS  300
FSIVMKPTHV CKAFTVNIRE KWLDMHVPDK VRIALLRVAP DEKRWPVRIM RTKWRRGFAR  360
GWGKFVLDNN LEEHDVCVFE LNEEGQANKK SIGFNVVIFR VLDEIVPLTR FSNTQPNASD  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-15	274	381	22	127	B3 domain-containing transcription factor VRN1
4i1k_B	2e-15	274	381	22	127	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969605.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBL	A0A061DHL1	0.0	A0A061DHL1_THECC; DSBA oxidoreductase family protein isoform 1
STRING	EOX91266	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25126	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-33	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG000513t1
Entrez Gene	18611036

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]