PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000371t1

Common Name

TCM_000371

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ZF-HD

Protein Properties

Length: 386aa MW: 43164.6 Da PI: 9.0846

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000371t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106	2.3e-33	158	212	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eC+kNhAas+G+h++DGCgEfmps geegt++alkCaAC+CHRnFHR+e + Thecc1EG000371t1 158 IRYRECMKNHAASMGSHVMDGCGEFMPS-GEEGTPEALKCAACECHRNFHRKEING 212 79***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-21	158	211	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-30	158	210	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-30	159	210	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.54	160	209	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.4E-30	295	369	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-19	297	368	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.762	305	369	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	2.7E-28	307	364	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MLKQSCLCLL GLNLMELLTV REFLHQKLMS DQFNSSRDSS SKVSSSAPIN SGVGERRRDQ 60 TVHGDTTVLN PNPPQTLDLH PLYHPELNPQ HQIHKPRRDP DPDPDPDPVS APTATTSATV 120 TASANRSSLK SPQQQPPTSQ PPPVAAASPT TISSTPLIRY RECMKNHAAS MGSHVMDGCG 180 EFMPSGEEGT PEALKCAACE CHRNFHRKEI NGETQYAPSC YYSYNPNKNN NRRDTTHPPS 240 QLHPQQPIPL HQQRFSLGLS TSPTAMPIAP VMMNFRGGGP AESSSEDLNM FHSNAGGQIS 300 AQPQSSKKRF RTKFSQEQKD KMMEFAEKLG WRIQKQDEQE VQQFCAQVGV KRQVFKVWMH 360 NNKQAMKKKQ IWPHQSYRLK ETYPS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MLKQSCLCLL GLNLMELLTV REFLHQKLMS DQFNSSRDSS SKVSSSAPIN SGVGERRRDQ  60
TVHGDTTVLN PNPPQTLDLH PLYHPELNPQ HQIHKPRRDP DPDPDPDPVS APTATTSATV  120
TASANRSSLK SPQQQPPTSQ PPPVAAASPT TISSTPLIRY RECMKNHAAS MGSHVMDGCG  180
EFMPSGEEGT PEALKCAACE CHRNFHRKEI NGETQYAPSC YYSYNPNKNN NRRDTTHPPS  240
QLHPQQPIPL HQQRFSLGLS TSPTAMPIAP VMMNFRGGGP AESSSEDLNM FHSNAGGQIS  300
AQPQSSKKRF RTKFSQEQKD KMMEFAEKLG WRIQKQDEQE VQQFCAQVGV KRQVFKVWMH  360
NNKQAMKKKQ IWPHQSYRLK ETYPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-23	306	365	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00268	DAP	Transfer from AT2G18350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148735	9e-47	EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969466.1	0.0	PREDICTED: zinc-finger homeodomain protein 6
Swissprot	Q9ZPW7	6e-68	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A061DH37	0.0	A0A061DH37_THECC; Homeobox protein 24, putative
STRING	EOX91076	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6515	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-66	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Thecc1EG000371t1
Entrez Gene	18610918

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]