PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000362t2 | ||||||||
Common Name | TCM_000362 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 42107.8 Da PI: 7.8447 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.2e-09 | 218 | 265 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thecc1EG000362t2 218 SHSLAERARREKISKKMKCLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 265 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-14 | 212 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-8 | 212 | 267 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 214 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.231 | 214 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 218 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-7 | 220 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MLRGLHSLET CTYNGMDMTV LERQQARLKW QQQQNYGVQN NNPIELCASS VPQIQGFLGS 60 SFGSGQLVEM KKPEVYLGSD DFPKFVNLSV AGPEFSASKM DLVPPEAAAD YCISRTSSCQ 120 MTAFQTAVMN EEREDVILKK MESTTGRESF NKRKVEAVQD DKCKDKRIKG EVEGESEVKT 180 KCSTEVSRNS SKGNSKASEV QKPDYIHVRA RRGQATDSHS LAERARREKI SKKMKCLQDL 240 VPGCNKITGK AGMLDEIINY VQSLQRQFLS MKLAAVNPSV EFNVDNLPAK EFPAYVANFP 300 AAAKSPAMAN LACLQFNPLQ KAVSCMLDAT GHPPQTATEG IASASISIPE QALSSSCITL 360 QPFSTWNTDP QGLYNVYNMG FH* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00106 | PBM | Transfer from AT2G18300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969936.1 | 0.0 | PREDICTED: transcription factor HBI1 isoform X2 | ||||
TrEMBL | A0A061DM64 | 0.0 | A0A061DM64_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2 | ||||
STRING | EOX91062 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.2 | 1e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000362t2 |
Entrez Gene | 18610912 |
Publications ? help Back to Top | |||
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