PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000266t4
Common NameTCM_000266
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 165aa    MW: 19334.3 Da    PI: 10.398
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000266t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.3e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fss+gk++e++s
  Thecc1EG000266t4  9 KKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFIS 59
                      68***********************************************86 PP
2K-box74.33.5e-2571153184
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                       yqk+ g +l+++++e++q+++++Lk+ ++ L+re  +++GedL++L++keLq Le ++ +sl+ +R++K++++++q+++ +k +
  Thecc1EG000266t4  71 YQKTLGIDLWSSHYEKMQENYRRLKEINNRLRRE-MQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKSK 153
                       78899999*************************9.9******************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.632161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-37295IPR002100Transcription factor, MADS-box
CDDcd002654.54E-37280No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-1682153IPR002487Transcription factor, K-box
PROSITE profilePS5129710.93484165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRGKIEIKK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS SGKFHEFISP  60
NISTKTFFDL YQKTLGIDLW SSHYEKMQEN YRRLKEINNR LRREMQRIGE DLDDLNIKEL  120
QALEAKMASS LEAVRQRKYH VIKTQTDTYK KSKELGAKTC KSCAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15162162MEF2 CHIMERA
6byy_B3e-15162162MEF2 CHIMERA
6byy_C3e-15162162MEF2 CHIMERA
6byy_D3e-15162162MEF2 CHIMERA
6bz1_A3e-15162162MEF2 CHIMERA
6bz1_B3e-15162162MEF2 CHIMERA
6bz1_C3e-15162162MEF2 CHIMERA
6bz1_D3e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556471e-145KC155647.1 Gossypium hirsutum MADS box protein MADS52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046776.11e-105PREDICTED: floral homeotic protein PMADS 1 isoform X2
RefseqXP_021274111.11e-105floral homeotic protein PMADS 1-like isoform X2
SwissprotQ003J21e-83TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A061DFE81e-119A0A061DFE8_THECC; MADS domain class transcription factor isoform 4 (Fragment)
STRINGEOX909311e-103(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]