PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000262t1
Common NameTCM_000262
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 390aa    MW: 42569.2 Da    PI: 6.1936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000262t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19305339135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Thecc1EG000262t1 305 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 339
                       *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-18299353IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.229299335IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-14301362No hitNo description
Gene3DG3DSA:3.30.50.106.8E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.76E-15304352No hitNo description
PfamPF003203.8E-17305339IPR000679Zinc finger, GATA-type
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLYQTHHHPF FFHFRSFTSI PPPLPSTTPS LLPSSLQEME CVEAALKTSF RKEMALKSSP  60
QAFLEDIWLA NGQNGVSSDD FSVDDLFDFT NEEGFLEQQQ QPQHEEEEEE EDEGAPISSS  120
SSSPKRQKLS QEEHLSNDTT TNFDYGSLPT SELAVPADDV ANLEWLSHFV EDSFSEHSTA  180
YPTGTLTENP KLQADILAEP EKPVITTCFK TPVPAKARSK RTRTGGRVWS LVASPSLTES  240
SSSSTSSSSS SSPSSPWLLY PNSGSGSTFE PSEPLSVEKP PAKKHKKRPA TDSTGGNGTQ  300
PTRRCSHCGV TKTPQWRAGP MGAKTLCNAC GVRFKSGRLL PEYRPACSPT FSSELHSNHH  360
RKVLEMRRKK ETLGQAGPGL APPVVPSFG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046767.20.0PREDICTED: GATA transcription factor 5
SwissprotQ9FH572e-95GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A061DFE10.0A0A061DFE1_THECC; GATA transcription factor
STRINGEOX909240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-48GATA transcription factor 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]