PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG000229t1

Common Name

TCM_000229

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 516aa MW: 56083.4 Da PI: 8.3969

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG000229t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.3e-06	461	484	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+ C+ G++C + H+ Thecc1EG000229t1 461 QKPCMYFSTPKGCRNGSNCLYLHD 484 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.756	458	486	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-4	462	485	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MKRSRKSNRV SWAPGVNLCQ VKLFLAEDCP SKVGELQDTL QAKTSWTLQP SGMCANDLPP 60 GFEGGHHVNG LKYDLAEMPR IQWTCPPKFV LNFNWHVAAA EESEEVEAQK LREMRVLEAV 120 YPRLSAIPPS PSVSMDVEVE PHDDRRTPLV PLTPIEDEEG ADVSSDFAAQ PKTLSNSQTA 180 ALIMPQGLSG SGTHSMPNCP SSAVKSPALD MLPGASSDVV VAASAALSAV MKSKEQGTLI 240 DTDLLVKILS DPKMVEKLIQ DHGNLPTAAN AVSTPVRTSE PETIITSLPR PKPAIVSSPM 300 PADRNSNHFI KEFQPALTMP APRADIVSVS MPKRVEPSVP SFADINMISG HRAANGNAYS 360 TFNKMQPALS MMPVQPKPLS EVQPAISSTP MQLNAGLAVT AMAANPVKDA NYIKNLIREH 420 GREKQEPKVH NIPKTVSHLN HTQNQNMVQN IKPVALKAKF QKPCMYFSTP KGCRNGSNCL 480 YLHDKSLQWQ TGRTLELEAP SAKKMKLGWE ITGRI*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MKRSRKSNRV SWAPGVNLCQ VKLFLAEDCP SKVGELQDTL QAKTSWTLQP SGMCANDLPP  60
GFEGGHHVNG LKYDLAEMPR IQWTCPPKFV LNFNWHVAAA EESEEVEAQK LREMRVLEAV  120
YPRLSAIPPS PSVSMDVEVE PHDDRRTPLV PLTPIEDEEG ADVSSDFAAQ PKTLSNSQTA  180
ALIMPQGLSG SGTHSMPNCP SSAVKSPALD MLPGASSDVV VAASAALSAV MKSKEQGTLI  240
DTDLLVKILS DPKMVEKLIQ DHGNLPTAAN AVSTPVRTSE PETIITSLPR PKPAIVSSPM  300
PADRNSNHFI KEFQPALTMP APRADIVSVS MPKRVEPSVP SFADINMISG HRAANGNAYS  360
TFNKMQPALS MMPVQPKPLS EVQPAISSTP MQLNAGLAVT AMAANPVKDA NYIKNLIREH  420
GREKQEPKVH NIPKTVSHLN HTQNQNMVQN IKPVALKAKF QKPCMYFSTP KGCRNGSNCL  480
YLHDKSLQWQ TGRTLELEAP SAKKMKLGWE ITGRI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046728.2	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6
TrEMBL	A0A061DFE9	0.0	A0A061DFE9_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRING	EOX90885	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Link Out ? help Back to Top
Phytozome	Thecc1EG000229t1
Entrez Gene	18610792

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]