PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000204t1 | ||||||||
Common Name | TCM_000204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35022.8 Da PI: 5.7231 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 40 | 89 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L Thecc1EG000204t1 40 RKVQKADREKLRRDRLNEQFLELGNTLDPD----RPKNDKATILMDTIQMLKDL 89 5677889********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.887 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-7 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.58E-6 | 40 | 94 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 40 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-12 | 40 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-5 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MDHQWKSNDF SKSVAADLGP SNPEPRQRQE VEVKDPIAAR KVQKADREKL RRDRLNEQFL 60 ELGNTLDPDR PKNDKATILM DTIQMLKDLT AEVSRLKDEC SSLTEESREL TQEKNELREE 120 KASLKADIDN LNVQYQQRLR VMFPWNGIDP SVVMPPPYSY PVHLPLPTGP IPIHPSLQPY 180 PLYGNHNPGA IANPCSTFMP YSATTNTPID QPSSQHASSS HTSIKRDSRS KSMDEQRGSN 240 GDRCDGSNDV ATELELKMPG SSTNQELSAG EKKGKQTQKE RSMVNGSSSS RYSLSQGLQD 300 SSSDSVDDVP NSNK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046692.2 | 0.0 | PREDICTED: transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 6e-75 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A061DFA4 | 0.0 | A0A061DFA4_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1 | ||||
STRING | EOX90849 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19860.1 | 6e-74 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000204t1 |
Entrez Gene | 18610768 |
Publications ? help Back to Top | |||
---|---|---|---|
|