PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000174t1
Common NameTCM_000174
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 227aa    MW: 25572 Da    PI: 8.4903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000174t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEdell+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Thecc1EG000174t1 14 KGAWTREEDELLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding60.53.5e-1967111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T eEdel+v+++ +lG++ W+ Ia++++ gRt++++k++w+++
  Thecc1EG000174t1  67 RGNFTDEEDELIVKLHSLLGNK-WSIIAARLP-GRTDNEIKNHWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.871961IPR017930Myb domain
SMARTSM007179.8E-141363IPR001005SANT/Myb domain
SuperFamilySSF466891.02E-2913108IPR009057Homeodomain-like
PfamPF002494.3E-151461IPR001005SANT/Myb domain
CDDcd001678.49E-111661No hitNo description
PROSITE profilePS5129429.96362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2865116IPR009057Homeodomain-like
SMARTSM007179.6E-1866114IPR001005SANT/Myb domain
PfamPF002496.4E-1767111IPR001005SANT/Myb domain
CDDcd001679.99E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRSPCCEKG HTNKGAWTRE EDELLIAYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIVK LHSLLGNKWS IIAARLPGRT DNEIKNHWNT HIKRKLLSRG  120
IDPLTHRQIN EQAATRSIDR ASSAAVLRQD AKTDNEFPYL NQNNPDGEKY PDLNLELQIS  180
PPSSHPPRKE ETTDIKIICF CSSLGLQNSK GCTCGAVGIE HLRFYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046650.21e-166PREDICTED: myb-related protein 308
SwissprotP813931e-98MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A061DFP31e-167A0A061DFP3_THECC; MYB domain class transcription factor
STRINGEOX908071e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-94myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]