PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG000152t1 | ||||||||
Common Name | TCM_000152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 264aa MW: 28961.3 Da PI: 10.7608 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.8 | 3.2e-15 | 193 | 250 | 4 | 61 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lk + e+l+ +a+ s Thecc1EG000152t1 193 DRRHKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARLKRQQEQLRVAAAAQLS 250 689********************************************99977765555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.8E-13 | 190 | 254 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.369 | 192 | 242 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.00E-29 | 194 | 248 | No hit | No description |
SuperFamily | SSF57959 | 5.63E-11 | 194 | 242 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 194 | 245 | No hit | No description |
Pfam | PF07716 | 1.7E-12 | 194 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 197 | 212 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MLSSTGGEEN NYNKATISLK RVSSTSSKSS STSSSPSLFS PPSHLHDQTH RPKTMEEVWK 60 DINLASLNDH PSREGLSVNP RLTNPQNPNF ILQDFLARPF SKDPPTNRVC TNGGAGLYGS 120 PVRPPATVLS LNSGPGFDFF DNSDPLRSTS RLQSSPISNL STFNCPFEAL ASSSSLASFG 180 KKRVKESDSG SGDRRHKRMI KNRESAARSR ARKQAYTNEL ELEVAHLMEE NARLKRQQEQ 240 LRVAAAAQLS KKRTLQRTST APF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046623.2 | 0.0 | PREDICTED: protein FD isoform X1 | ||||
Swissprot | Q84JK2 | 9e-75 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A061DF98 | 0.0 | A0A061DF98_THECC; Basic-leucine zipper transcription factor family protein, putative | ||||
STRING | EOX90780 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35900.1 | 7e-73 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG000152t1 |
Entrez Gene | 18610722 |