PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000084t1 | ||||||||
Common Name | TCM_000084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 199aa MW: 22826.4 Da PI: 8.3433 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.7 | 7.7e-39 | 74 | 151 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+++C++dl +ak+yhrrhkvCe h+ka+ v v+g++qrfCqqCsrfhe+sefD +krsCr+rLa+hnerrrk q+ Thecc1EG000084t1 74 CCQADECDTDLRDAKQYHRRHKVCERHAKAAFVSVKGIRQRFCQQCSRFHEISEFDSTKRSCRDRLAGHNERRRKVQS 151 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-31 | 68 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.436 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-36 | 73 | 153 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-31 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAKGSFKTLG GIEDESGTEQ ESEAESEDEE KQEQGEERRV MIRVVPRERF ERRSLIQSHS 60 ASCRRGDGGG SLLCCQADEC DTDLRDAKQY HRRHKVCERH AKAAFVSVKG IRQRFCQQCS 120 RFHEISEFDS TKRSCRDRLA GHNERRRKVQ SDQQAEDVER SPASEMNTSM VKMQAARHPK 180 HGELTLQGCT DPKRFRIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-32 | 68 | 148 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007046540.1 | 1e-142 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A061DFJ2 | 1e-141 | A0A061DFJ2_THECC; Squamosa promoter-binding protein-like 12 | ||||
STRING | EOX90697 | 1e-142 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22067 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 2e-36 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000084t1 |
Entrez Gene | 18610665 |
Publications ? help Back to Top | |||
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